Science - USA (2022-05-27)

(Maropa) #1

on human cells and tissues, such as organoids
( 69 ) and air-liquid interface culture systems
( 70 ), will aid investigation of causalities be-
tween and the microbiome and human dis-
eases (Fig. 3).


Conclusions


Microbiome research at host barriers has changed
the dominant concept that microbes are gen-
erally harmful into a more nuanced under-
standing of the importance of resident microbes
to overall host health. Mounting evidence for
the role that perturbations in the microbiota
play in systemic human disease has generated
great interest in finding microbiota-based ther-
apies. Despite the far greater understanding
that we now have of the pivotal role that the
microbiota of an organism may have in main-
taining health, new approaches are still re-
quired to fully understand the complexities of
temporal and spatial dynamics of the micro-
biota, the interkingdom interactions within
microbial communities,andtheconstantex-
change of signals between the microbiota and
its host.


REFERENCES AND NOTES



  1. F. Bishehsari, R. M. Voigt, A. Keshavarzian,Nat. Rev. Endocrinol. 16 ,
    731 – 739 (2020).

  2. R. X. Wang, J. S. Lee, E. L. Campbell, S. P. Colgan,Proc. Natl.
    Acad. Sci. U.S.A. 117 , 11648–11657 (2020).

  3. A. Abot, S. Fried, P. D. Cani, C. Knauf,Antioxid. Redox Signal.
    ars.2021.0100 (2021).

  4. L. V. Hooper, D. R. Littman, A. J. Macpherson,Science 336 ,
    1268 – 1273 (2012).

  5. G. C. Hansson,Annu. Rev. Biochem. 89 , 769–793 (2020).
    6. A. N. Skelly, Y. Sato, S. Kearney, K. Honda,Nat. Rev. Immunol.
    19 , 305–323 (2019).
    7. B. Kimet al., eLife 8 , e45343 (2019).
    8. V. A. Pedicordet al., Sci. Immunol. 1 , eaai7732 (2016).
    9. C. Petersen, J. L. Round,Cell. Microbiol. 16 , 1024–1033 (2014).
    10. E. Mathieuet al., Front. Physiol. 9 , 1168 (2018).
    11. A. L. Kauet al., Sci. Transl. Med. 7 , 276ra24 (2015).
    12. R. Y. Chenet al., N. Engl. J. Med. 383 , 321–333 (2020).
    13. D. Paredes-Sabja, A. Shen, J. A. Sorg,Trends Microbiol. 22 ,
    406 – 416 (2014).
    14. D. R. Plichta, D. B. Graham, S. Subramanian, R. J. Xavier,
    Cell 178 , 1041–1056 (2019).
    15. P. Feuerstadtet al., N. Engl. J. Med. 386 , 220–229 (2022).
    16. I. I. Ivanovet al., Cell 139 , 485–498 (2009).
    17. L. Cervantes-Barraganet al., Science 357 , 806–810 (2017).
    18. S. Naiket al., Nature 520 , 104–108 (2015).
    19. C. G. Buffieet al., Nature 517 , 205–208 (2015).
    20. T. Tanoueet al., Nature 565 , 600–605 (2019).
    21. K. Atarashiet al., Nature 500 , 232–236 (2013).
    22. S. Caballeroet al., Cell Host Microbe 21 , 592–602.e4 (2017).
    23. P. Vonaesch, M. Anderson, P. J. Sansonetti,FEMS Microbiol. Rev.
    42 ,273–292 (2018).
    24. J. A. Segre,J. Invest. Dermatol. 133 ,2141–2142 (2013).
    25. S. M. Bloomet al., Cell Host Microbe 9 , 390–403 (2011).
    26. C. S. Changet al., Cell Rep. 37 , 110016 (2021).
    27. K. Cadwellet al., Cell 141 , 1135–1145 (2010).
    28. U. Jainet al., Science 371 , 1154–1159 (2021).
    29. S. Falkow,Rev. Infect. Dis. 10 , S274–S276 (1988).
    30. D. L. Moyeset al.,Nature 532 ,64–68 (2016).
    31. J. Chow, H. Tang, S. K. Mazmanian,Curr. Opin. Immunol. 23 ,
    473 – 480 (2011).
    32. D. Fanet al., Nat. Med. 21 , 808–814 (2015).
    33. R. C. Boutinet al., eLife 10 , e67740 (2021).
    34. J. H. Skalskiet al., PLOS Pathog. 14 , e1007260 (2018).
    35. R. N. Fichorovaet al., PLOS ONE 7 , e48418 (2012).
    36. A. Chudnovskiyet al., Cell 167 , 444–456.e14 (2016).
    37. P. Desaiet al., Cell 184 , 1214–1231.e16 (2021).
    38. M. M. Zaisset al., Immunity 43 , 998–1010 (2015).
    39. Z. Huet al., Science 374 , eabe6723 (2021).
    40. A. Reyes, M. Wu, N. P. McNulty, F. L. Rohwer, J. I. Gordon,
    Proc. Natl. Acad. Sci. U.S.A. 110 , 20236–20241 (2013).
    41. B. B. Hsuet al., Cell Host Microbe 25 , 803–814.e5 (2019).
    42. L. Gogokhiaet al., Cell Host Microbe 25 ,285–299.e8 (2019).
    43. Y. Duanet al., Nature 575 , 505–511 (2019).
    44. E. A. Franzosaet al.,Nat. Microbiol. 4 , 293–305 (2019).
    45. S. A. Scott, J. Fu, P. V. Chang,Proc. Natl. Acad. Sci. U.S.A. 117 ,
    19376 – 19387 (2020).
    46. V. Rothhammeret al., Nat. Med. 22 , 586–597 (2016).
    47. B. van der Hee, J. M. Wells,Trends Microbiol. 29 ,700–712 (2021).
    48. Y. Furusawaet al., Nature 504 , 446–450 (2013).
    49. A. N. Thorburnet al., Nat. Commun. 6 , 7320 (2015).
    50. W. H. Tanget al., N. Engl. J. Med. 368 , 1575–1584 (2013).
    51. A. B. Robertset al., Nat. Med. 24 , 1407–1417 (2018).
    52. U. Jainet al., Cell Host Microbe 24 , 353–363.e5 (2018).
    53. E. S. Winkleret al., Cell 182 , 901–918.e18 (2020).
    54. T. Fuet al., Cell 176 , 1098–1112.e18 (2019).
    55. R. H. Millset al., Nat. Microbiol. 7 , 262–276 (2022).
    56. C. Yanget al., Cell Host Microbe 27 , 467–475.e6 (2020).
    57. X. V. Liet al., Nature 603 , 672–678 (2022).
    58. A. Almeidaet al., Nat. Biotechnol. 39 , 105–114 (2021).
    59. L. Xiaoet al., Nat. Biotechnol. 33 , 1103–1108 (2015).
    60. J. C. Lagieret al., Nat. Microbiol. 1 , 16203 (2016).
    61. J. Lloyd-Priceet al., Nature 569 , 655–662 (2019).
    62. K. N. Lamet al., Cell Rep. 37 , 109930 (2021).
    63. B. E. Rubinet al., Nat. Microbiol. 7 ,34–47 (2022).
    64. T. L. Nguyen, S. Vieira-Silva, A. Liston, J. Raes,Dis. Model.
    Mech. 8 ,1–16 (2015).
    65. A. E. Douglas,Nat. Rev. Microbiol. 17 , 764–775 (2019).
    66. H. W. Changet al., Proc. Natl. Acad. Sci. U.S.A. 118 ,
    e2024446118 (2021).
    67. S. Alaviet al., Cell 181 , 1533–1546.e13 (2020).
    68. N. L. Ting, H. C. Lau, J. Yu,Gutgutjnl-2021-326264 (2022).
    69. V. Bozzetti, S. Senger,Trends Mol. Med. 28 , 290–303 (2022).
    70. G. Wilkeet al., Cell Host Microbe 26 , 123–134.e8 (2019).


ACKNOWLEDGMENTS
We apologize for not being able to cite and highlight all of the
outstanding work in this field. To those entering the field, this
review hopefully serves as a selective guide for how to approach
microbial function and make new discoveries that can answer
pressing public health needs.Funding:Funding is from the NIH,
grants DK122790 and AT009741; the Kenneth Rainin Foundation;
and the Crohn’s & Colitis Foundation.Competing interests:The
authors declare no competing interests.License information:
Copyright © 2022 the authors, some rights reserved; exclusive
licensee American Association for the Advancement of Science. No
claim to original US government works. https://www.science.org/
about/science-licenses-journal-article-reuse

Submitted 21 February 2022; accepted 20 April 2022
10.1126/science.abo2366

Lu et al., Science 376 , 950–955 (2022) 27 May 2022 6of6

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