1549380323-Statistical Mechanics Theory and Molecular Simulation

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Integrating Nos ́e–Hoover chains 201

Consider the action of the operator exp(cx∂/∂x) onx. We can work this out using
a Taylor series:


exp

[


cx


∂x

]


x=

[∞



k=0

ck
k!

(


x


∂x

)k]
x

=x

∑∞


k=0

ck
k!

=xec. (4.11.18)

We see that the operator scalesxby the constant ec. Similarly, the action of the
operator exp(cx∂/∂x) on a functionf(x) isf(xec). Using this general result, each of
the operators in eqn. (4.11.17) can be turned into a simple instruction in code (either
translation or scaling) via the direct translation technique from Section 3.10.
At this point, several comments are in order. First, the separation of the non-
Hamiltonian component of the equations of motion from the Hamiltonian component
in eqn. (4.11.8) makes implementation of RESPA integration with Nos ́e–Hoover chains
relatively straightforward. For example, suppose a system has fast and slow forces as
discussed in Section 3.11. Instead of decomposing the Liouville operator as was done
in eqn. (4.11.8), we could expressiLas


iL=iLfast+iLslow+iLNHC (4.11.19)

and further decomposeiLfastinto kinetic and force termsiL(1)fast+iL(2)fast, respectively.
Then, the propagator can be factorized according to


eiL∆t= eiLNHC∆t/^2 eiLslow∆t/^2

×


[


eiL

(2)
fastδt/^2 eiL
(1)
fastδteiL
(2)
fastδt/^2

]n

×eiLslow∆t/^2 eiLNHC∆t/^2 , (4.11.20)

whereδt= ∆t/n. In such a factorization, theτ parameter in eqn. (4.10.2) should
be chosen according to the time scale of the slow forces. On the other hand, if the
thermostats are needed to act on a faster time scale, then they can be pulled into the
reference system by writing the propagator as:


eiL∆t= eiLNHCδt/^2 eiLslow∆t/^2 e−iLNHCδt/^2
×

[


eiLNHCδt/^2 eiL

(2)
fastδt/^2 eiL
(1)
fastδteiL
(2)
fastδt/^2 eiLNHCδt/^2

]n

×e−iLNHCδt/^2 eiLslow∆t/^2 eiLNHCδt/^2. (4.11.21)

Here, the operator exp(−iLNHCδt/2) is never really applied; its presence in eqn.
(4.11.21) indicates that in the first and last RESPA steps, the Nos ́e–Hoover chain

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