Nature - USA (2020-02-13)

(Antfer) #1

2


nature research | reporting summary


April 2018

Data


Policy information about availability of data
All manuscripts must include a data availability statement. This statement should provide the following information, where applicable:


  • Accession codes, unique identifiers, or web links for publicly available datasets

  • A list of figures that have associated raw data

  • A description of any restrictions on data availability
    RNASeq and ChIPSeq dataset can be accessed in GEO (Accession GSE118152, GSE118247, GSE130269). Crystal coordinates and X-ray diffraction data was deposited
    in the protein databank with the accession code 6E6J and 6ONY. Other datasets generated and/or analyzed during the current study are available from the
    corresponding author on reasonable request.


Field-specific reporting


Please select the best fit for your research. If you are not sure, read the appropriate sections before making your selection.

Life sciences Behavioural & social sciences Ecological, evolutionary & environmental sciences
For a reference copy of the document with all sections, see nature.com/authors/policies/ReportingSummary-flat.pdf

Life sciences study design


All studies must disclose on these points even when the disclosure is negative.
Sample size For efficacy studies, a one sided t-test was used to determine the number of
animals needed to obtain 80% power at alpha = 0.05. For rat tox studies, sample size of n=3 animals per group was based on internal
experience of ability to identify test article related changes during drug candidate selection.

Data exclusions No data were excluded from the analysis.

Replication Experiments were repeated with same conditions and obtained similar results. The number of repeats were indicated in figure legends.

Randomization For efficacy study, mice were randomized into treatment groups using Studylog software (Studylog Systems, Inc., South San Francisco, CA)
based on tumor volume. For rat tox study, animal allocation to vehicle and treatment groups was at random based on body weight.

Blinding Partial blinding for efficacy studies was used. A multiple technicians formulated and dosed compounds and randomized the groups. Additional
investigators blinded to the test agents measured tumor volumes during the study. Toxicologic data analysis is generally performed in
unblinded fashion which was the case for data described in this paper.

Reporting for specific materials, systems and methods


Materials & experimental systems
n/a Involved in the study
Unique biological materials
Antibodies
Eukaryotic cell lines
Palaeontology
Animals and other organisms
Human research participants

Methods
n/a Involved in the study
ChIP-seq
Flow cytometry
MRI-based neuroimaging

Antibodies


Antibodies used Information on all of the antibodies used in the study is presented in SI Table

Validation H3K27Ac Ab noted on Active motif website to be modENCODE validated, NGS-QC certified, and validated for ChIP-Seq. BRD4 Ab
is cited in at least 11 literature publications for ChIP and ChIP-Seq. AR Ab is cited in at least 28 literature publications including
ChIP and ChIP-Seq applications. Antibody information is presented in SI Table.
Free download pdf