Nature 2020 01 30 Part.02

(Grace) #1

ab


0500 1000 1500 2000 2500

0


20


40


60


80


100


Days


Percent survival


VEGF-C low
VEGF-C hi

VEGF-C lo

w

VEGF-C hi

0

1

2

3

4

5

6

7

8

9

Log2(Normalized Counts)

****

Healthy BrainGL261 Brain

0

100

200

300

400

VEGF-A

TPM

**


Healthy BrainGL261 Brain

0

2

4

6

8

TPM

VEGF-C



c d e


P<0.0001
P=0.003 P=0.0001

P=0.49

GBMcortex
amygdala

brodmann area 24 &

9

C1 segment
caudate nucleu

s

cerebellar hemispher

e

cerebellu

m

hippocampu

s

hypothalamus

nucleus accumbens

putamen

substantia nigra

tibial nerve

-3


-2


-1


0


1


2


3


4


5


6


7


Log2(TPM)


VEGF-C


******************

*0.24

********************

****

GBMcortex
amygdala

brodmann area 24 &

9

C1 segmen

t

caudate nucleus

cerebellar hemisphere

cerebellum
hippocampushypothalamu

s

nucleus accumben

s

putamen

substantia nigr

a

tibial nerv

e

0


5


10


15


Log2(TPM)


VEGF-A


************************************************

****

Extended Data Fig. 2 | Correlation of VEGF-C expression prof iles between
human and mouse glioblastoma. a–c, RNA-seq data of tumour tissue and
healthy brain tissue from different regions (TCGA, study accession phs000178.
v10.p8, and GTEX, study accession phs000424.v7.p2, respectively.
a, b, Expression profiles of VEGF-A (a) and VEGF-C (b) (glioblastoma (GBM),
n = 147; cortex, n = 133; amygdala, n = 81; Brodmann areas 24 and 9, n = 215; C1
segment, n = 75; caudate nucleus, n = 135; cerebellar hemisphere, n = 1 1 5;
cerebellum, n = 146; hippocampus, n = 103; hypothalamus, n = 101; nucleus


accumbens, n = 125; putamen, n = 103; substantia nigra, n = 72; tibial nerve,
n = 329). c, RNA-seq data of mouse healthy brain and GL261 tumours were
analysed (n = 3 biologically independent samples). d, ONCLNC (www.oncolnc.
org) data of patients with glioblastoma stratified into two groups (VEGF-C low,
lower 33%; VEGF-C high, upper 33%; n = 50). e, Kaplan–Meier survival curves of
patients from d (n = 50). Data are mean ± s.d. *P < 0.05; **P < 0.01; ***P < 0.001;
****P < 0.0001 (two-tailed unpaired Student’s t-test, two-sided log-rank
Mantel–Cox test or Pearson’s correlation).
Free download pdf