Nature 2020 01 30 Part.02

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nature research | reporting summary

October 2018

Software SAMTOOLS (v 1.9)
DEEPTOOLS (Ramirez et al., 2014) (v3.2.0)
DANPOS toolkit (Chen et al., 2013) (v2.2.2)
BEDTOOLS (v2.29.0)
FASTX Toolkit: http://hannonlab.cshl.edu/fastx_toolkit/ (v0.0.14)
TMAP Toolkit: https://github.com/iontorrent/TMAP (v3.4.0)
PICARD Toolkit: https://broadinstitute.github.io/picard/ (v2.14.1)
MACS2 Toolkit (v2.1.2)
BWA Toolkit: http://bio-bwa.sourceforge.net/ (v0.7.17-r1188)