- C. P. Bradleyet al.,Cell Host Microbe 22 , 697–704.e4 (2017).
- S. Viaudet al.,Science 342 , 971–976 (2013).
- M. G. Weinbauer,FEMS Microbiol. Rev. 28 , 127–181 (2004).
- M. Piuri, G. F. Hatfull,Mol. Microbiol. 62 , 1569– 1585
(2006). - M. Belcaid, A. Bergeron, G. Poisson,BMC Bioinformatics 12
(Suppl 9), S10 (2011). - G. Y. Leeet al.,Cancer Res. 74 , 3114–3126 (2014).
- Y.-C. Cheng, W.-C. Tsai, Y.-C. Sung, H.-H. Chang, Y. Chen,
Cell. Physiol. Biochem. 45 , 819–831 (2018). - X. Zhanget al.,Tumour Biol. 39 , 1010428317705767
(2017). - H. Wanget al.,Oncol. Rep. 40 , 2343–2352 (2018).
- E. Pasolliet al.,Nat. Methods 14 , 1023–1024 (2017).
- E. Pasolliet al.,Cell 176 , 649–662.e20 (2019).
- B. Samb-Baet al.,PLOS ONE 9 , e87419 (2014).
- T. J. Kelly, A. L. Souza, C. B. Clish, P. Puigserver,Mol. Cell. Biol.
31 , 2696–2706 (2011). - Z. Fenget al.,Histopathology 64 , 348–355 (2014).
- S.-C. Liuet al.,Cell Death Dis. 5 , e1485 (2014).
- T. M. Greilinget al.,Sci. Transl. Med. 10 , eaan2306 (2018).
- M. F. Koniget al.,Sci. Transl. Med. 8 , 369ra176 (2016).
- J. Liet al.,Nat. Biotechnol. 32 , 834–841 (2014).
- M. L. Pedullaet al.,Cell 113 , 171–182 (2003).
- K. E. Wommack, R. R. Colwell,Microbiol. Mol. Biol. Rev. 64 ,
69 – 114 (2000).
ACKNOWLEDGMENTS
We are thankful to the animal facility team of Gustave Roussy and
all the technicians from Centre GF Leclerc. We are indebted to
O. Kepp for figure design and to H. G. Rammensee (University
of Tübingen, Germany) for his careful guidance in peptide selection
and reading of the paper.Funding:L.Z. and G.K. were supported
by RHU Torino Lumière (ANR-16-RHUS-0008), ONCOBIOME
H2020 network, the Seerave Foundation, the Ligue contre le
Cancer (équipe labelisée); Agence Nationale de la Recherche
(ANR)–Projets blancs; ANR Francogermanique ANR-19-CE15-
0029 under the frame of E-Rare-2, the ERA-Net for Research on
Rare Diseases; Association pour la recherche sur le cancer (ARC);
Cancéropôle Ile-de-France; Fondation pour la Recherche Médicale
(FRM); a donation by Elior; the European Research Council (ERC);
Fondation Carrefour; High-end Foreign Expert Program in China
(GDW20171100085 and GDW20181100051), Institut National du
Cancer (INCa); Inserm (HTE); Institut Universitaire de France;
LeDucq Foundation; the LabEx Immuno-Oncology; the SIRIC
Stratified Oncology Cell DNA Repair and Tumor Immune
Elimination (SOCRATE); CARE network (directed by X. Mariette,
Kremlin Bicêtre AP-HP), and the SIRIC Cancer Research and
Personalized Medicine (CARPEM). The results shown here are
based upon data generated by the TCGA Research Network:
http://cancergenome.nih.gov/. I.C. was supported by National
Research, Development and Innovation Fund of Hungary Project
(no. FIEK_16-1-2016-0005). Z.S. was supported by the Research
and Technology Innovation Fund (NAP2-2017-1.2.1-NKP-0002) and
Breast Cancer Research Foundation (BCRF-17-156). Z.S. and I.C.
were supported by the Novo Nordisk Foundation Interdisciplinary
Synergy Programme Grant (NNF15OC0016584). P.N. was
supported by the Italian Association for Cancer Research (AIRC IG
19822). Mouse TCR sequencing was performed by the TRiPoD
ERC-Advanced EU (322856) grants to D.K. N.S. is supported by the
European Research Council (project ERC- STG MetaPG-716575).
L.D.S. is funded by a Roux-Cantarini fellowship from the Institut
Pasteur (Paris, France). Bristol-Myers-Squibb provided resources
to support translational research related to the NIVOREN clinical
trial enrolling kidney cancer patients.Competing interests:R.D.,
D.R., L.Z., and G.K. are cofounders of everImmune, a biotech
company devoted to the use of commensal microbes for the
treatment of cancers. R.D. is a full-time employee of everImmune.
L.Z., A.F., V.C., and R.D. are inventors on a patent application (WO/
2019/129753) submitted by Institute Gustave Roussy/INSERM/
University Paris Saclay that covers“Immunogenic sequences
from a Phage Tail Length Tape Measure Protein, bacteria
expressing the same and their use in treating a cancer.”
Data and materials availability:E. hirae13144 isolate and
E. hiraeisolates IGR4 and IGR11 are available from U1015 INSERM
under a material transfer agreement (with Gustave Roussy
Technology Transfer) or from the repository of Institut Pasteur
listed asEnterococcus hiraedeposited at the Collection Nationale
de Cultures de Microorganismes (CNCM) of Pasteur Institute,
Paris: strains 13144 (EHFS001), deposited on November 7, 2013,
under the number I-4815; IGR4 deposited on November 27, 2017,
under the number CNCM I-5260; and IGR11 deposited on
November 27, 2017, under the number CNCM I-5261. Bacteria
genomes sequenced in this study have been deposited in the
NCBI GenBank under the accession number PRNJA639126.
Microbiome-related mass spectrometry data have been deposited
(https://doi.org/10.35081/bd5t-nm23).
SUPPLEMENTARY MATERIALS
science.sciencemag.org/content/369/6506/936/suppl/DC1
Materials and Methods
Figs. S1 to S15
Tables S1 to S12
Statistical Report
References ( 38 – 52 )
View/request a protocol for this paper fromBio-protocol.
19 March 2019; resubmitted 28 February 2020
Accepted 23 June 2020
10.1126/science.aax0701
Fluckigeret al.,Science 369 , 936–942 (2020) 21 August 2020 7of7
RESEARCH | RESEARCH ARTICLE