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Tracheal Nasopharyngeal Rectal BAL
CTRL
Hi D1
Lo D1
Hi D1 + AZTH
Lo D5
PrEP
MF 1
MF 2
MF 3
MF 4
MF 5
MF 6
MF 7
MF 8
MF 9
MF 10
MF 11
MF 12
MF 13
MF 14
MF 15
MF 16
MF 17
MF 18
MF 19
MF 20
MF 21
MF 22
MF 23
MF 24
MF 25
MF 26
MF 27
MF 28
MF 29
MF 30
MF 31
Days post infection
Vira
lload(
Log
copies / mL) 10
abcd
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Extended Data Fig. 2 | Viral loads of SARS-CoV-2-infected cynomolgus
macaques treated with HCQ. a–d, Viral loads measured by RT–qPCR in throat
swabs (a), nasal swabs (b), rectal swabs (c) and bronchoalveolar lavages (d). The
limit of detection was estimated at 2.3 log 10 copies of SARS-CoV-2 RNA per ml
and the limit of quantification was estimated at 3.9 log 10 copies per ml (dotted
horizontal line). Shaded zones indicate treatment periods. Baseline was
adjusted to day 0 on the graphs. CTRL, control; D1, treatment started on day 1;
D5, treatment started on day 5; Hi, high HCQ dose; Lo, low HCQ dose; PrEP,
pre-exposure prophylaxis.