Science - USA (2021-07-09)

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in secondary recipients (fig. S9, I and J). Taken
together, our results, on the basis of the assess-
ment of these defined HSPC subpopulations,
suggest that the GATA1s preleukemia-initiating
event likely occurs in LT-HSCs and not down-


stream progenitors. However, subsequent
STAG2mutations are not limited to LT-HSCs
but can be acquired further downstream in the
expanded pool of GATA1s-primed progenitor
cells, highlighting that the preleukemic and

leukemic events could occur in distinct cells
of origin.
To verify whether leukemic transformation
can be induced in a stepwise transplantation
setting and to confirm whether progenitor-like

Wagenblastet al.,Science 373 , eabf6202 (2021) 9 July 2021 7 of 13


T21-FL
ST-HSC
GATA1s/STAG2ko

T21-FL
CMP
GATA1s/STAG2ko

T21-FL
MEP
GATA1s/STAG2ko

FSC-A

SSC-A

CD34-BV421

CD117-PE

CD45+ Blast:

Out of CD45+:

Sort progenitors
from N-FL and T21-FL

Electroporation of RNPs
against GATA1/STAG2

Xenotransplantation
(12 weeks)

Leukemic analysis:
flow cytometry + genotyping

Cas9

+


  • Blast


AB C

D E F

G

Cohesin

Epigenetic

T21-FL
CMP+MEP
GATA1s +

Average
% CD45
Engraftment
STAG2 19.8
RAD21 15.0
NIPBL 6.4
SMC1A 19.4
SMC3 2.1
CTCF -
KANSL1 2.7
EZH2 -
Control -

(out of 5)

Engrafted mice

H

Sort CMP+MEP
from T21-FL

Electroporation of RNPs
against GATA1 + candidate

Xenotransplantation
(12 weeks)

Leukemic analysis:
flow cytometry + genotyping

Cas9

+


  • Blast


Pool and screen

T21-FL
CMP+MEP
GATA1s + KANSL1

T21-FL
CMP+MEP
GATA1s + SMC3

T21-FL
CMP+MEP
GATA1s + SMC1A

T21-FL
CMP+MEP
GATA1s + NIPBL

T21-FL
CMP+MEP
GATA1s + RAD21

T21-FL
CMP+MEP
GATA1s + STAG2

FSC-A

SSC-A

CD34-BV421

CD117-PE

CD45+ Blast:

Out of CD45+:

ControlGATA1sSTAG2ko

GATA1s/STAG2ko

ControlGATA1sSTAG2ko

GAT

A1s/STAG2ko

ControlGATA1sSTAG2ko

GATA1s/ST

AG2ko

0.01

0.1

1

10

100

% CD45+ Engraftment

N-FL: ST-HSC CMP MEP

ControlGATA1sSTAG2ko

GATA1s/STAG2ko

ControlGATA1sSTAG2ko

GATA1s/S

TAG2koControlGATA1sSTAG2ko

GATA1s/STAG2ko

0.01

0.1

1

10

100

% CD45+ Engraftment

T21-FL: ST-HSC CMP MEP

SSC-A

ST-HSC
CMPMEP
ST-HSC
CMPMEP

0

20

40

60

80

100

% Human cells

GATA1s/STAG2ko GATA1s/STAG2ko

N-FL T21-FL

Unknown

Blast
Myeloid cells
(not blast-like)

Erythroid
precursors

Lymphocytes

Fig. 4. Combined GATA1s and STAG2ko drive leukemic progression in
progenitors.(A) Experimental overview of sorting N-FL and T21-FL derived
progenitor cells for CRISPR/Cas9 editing and transplanting into NSGW41
mice. (B) Engraftment of N-FL ST-HSC, CMP, and MEP grafts in NSGW41 mice
(all mice are shown regardless of CD45+engraftment,n=4or5miceper
condition). (C) Engraftment as described in (B) for T21-FL (n= 5 mice per
condition). (D) Quantification of cell morphology of human cells prepared by
using cytospin in N-FL and T21-FL GATA1s/STAG2ko grafts in NSGW41 mice
from(B)and(C)(n= 400 cells per condition). (E) Flow cytometry plots
depicting the blast population out of CD45+cells in primary xenografts of


T21-FL GATA1s/STAG2ko progenitors in NSGW41 mice, as described in (C).
The CD34/CD117 profiles out of the CD45+blast populations are depicted
below. (F) Experimental overview of sorting T21-FL CMPs and MEPs to conduct
a loss-of-function screen to identify genes that endow leukemic progression
in combination with GATA1s. (G) Result of screen described in (F) showing
the number of mice with leukemic phenotypes based on average CD45+
engraftment in BM and blast appearance (>1% CD45+in BM,n= 5 mice per
condition). (H) Flow cytometry plots of blast populations out of CD45+cells in
grafts of T21-FL CMPs and MEPs edited with GATA1s and candidate gene
gRNAs as described in (F).

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