signals that    originate   largely from    subcortical regions (the    thalamus,
basal    ganglia,    and     brainstem).     Each    functional  column  has     a
component   at  the surface (layers 1–3),   so  that    meningitis  effectively
disrupts    the function    of  each    column  just    by  damaging    the surface
layers   of  the     cortex.     The     anatomical  distribution    of  inhibitory  and
excitatory  cells,  which   have    a   fairly  balanced    distribution    within  the
six layers, does    not support this    hypothesis. Diffuse meningitis  over
the brain’s surface effectively disables    the entire  neocortex   due to  this
columnar    architecture.   Full-thickness  destruction is  unnecessary for
total   functional  disruption. Given   the prolonged   course  of  my  poor
neurological    function    (seven  days)   and the severity    of  my  infection,  it
is  unlikely    that    even    deeper  layers  of  the cortex  were    still   functioning.
- The thalamus,   basal   ganglia,    and brainstem   are deeper  brain   structures
(“subcortical   regions”)   that    some    colleagues  postulated  might   have
contributed to  the processing  of  such    hyperreal   experiences.    In  fact,
none    of  those   structures  could   play    any such    role    without having  at
least   some    regions of  the neocortex   still   intact. All agreed  in  the end
that     such    subcortical     structures  alone   could   not     have    handled     the
intense  neural  calculations    required    for     such    a   richly  interactive
experiential    tapestry. 
- A   “reboot     phenomenon”—a   random  dump    of  bizarre     disjointed
memories     due     to  old     memories    in  the     damaged     neocortex,  which
might    occur   on  restarting  the     cortex  into    consciousness   after   a
prolonged    system-wide     failure,    as  in  my  diffuse     meningitis.
Especially   given   the     intricacies     of  my  elaborate   recollections,  this
seems   most    unlikely. 
- Unusual     memory  generation  through     an  archaic     visual  pathway
through  the     midbrain,   prominently     used    in  birds   but     only    rarely
identifiable    in  humans. It  can be  demonstrated    in  humans  who are
cortically  blind,  due to  damaged occipital   cortex. It  provided    no  clue
as  to  the ultra-reality   I   witnessed,  and failed  to  explain the auditory-