Fundamentals of Medicinal Chemistry

(Brent) #1
usually bind to an enzyme by strong covalent bonds. However, in both revers-

ible and irreversible inhibition the inhibitor does not need to bind to the active

site in order to prevent enzyme action.

Reversible: EþIÐEI complex

Irreversible: EþI!EI complex

7. 3. 1 Reversible inhibitors

These are inhibitors that form a dynamic equilibrium system with the enzyme.

The inhibitory effects of reversible inhibitors are normally time dependent

because the removal of unbound inhibitor from the vicinity of its site of action

by natural processes will disturb this equilibrium to the left. As a result, more

enzyme becomes available, which causes a decrease in the inhibition of the

process catalysed by the enzyme. Consequently, reversible enzyme inhibitors

will only be effective for a specific period of time.

Most reversible inhibitors may be further classified as being eithercompeti-

tive, non-competitive oruncompetitive.Incompetitive inhibition the inhibitor

usuallybinds by a reversible process to the same active site of the enzyme as

the substrate. Since the substrate and inhibitor compete for the same active site

it follows that they will probably be structurally similar (Figure 7.3). This offers

a rational approach to drug design in this area.

COO− COO−

COO−
Succinate

COO−
Fumarate

COO−

COO−
Malonate

Succinate
dehydrogenase

Figure 7.3 The similarity of the structures of malonate and succinate explains why malonate


inhibits succinate dehydrogenase


Non-competitive inhibitorsbind reversibly to an allosteric site (see Appendix 7)

on the enzyme. Inpurenon-competitive inhibition, the binding of the inhibitor

to the enzyme does not influence the binding of the substrate to the enzyme.

However, this situation is uncommon, and the binding of the inhibitor usually

causes conformational changes in the structure of the enzyme, which in turn

affects the binding of the substrate to the enzyme. This is known asmixednon-

competitive inhibition. The fact that the inhibitor does not bind to the active site

of the enzyme means that the structure of the substrate cannot be used as the

basis of designing new drugs that act in this manner to inhibit enzyme action.

DRUGS THAT TARGET ENZYMES 139

Free download pdf