Environmental Microbiology of Aquatic and Waste Systems

(Martin Jones) #1

11.2.1 The Stockholm Conference, 1972: Beginning


  - Environments 2.2 Ecological Habitats of Microorganisms in Aquatic


  • 2.3 Foreign Versus Indigenous Aquatic Bacteria

    • Population in Natural Waters 2.4 Challenges of Aquatic Life: Factors Affecting the Microbial

    • Environment 2.5 Methods for the Enumeration of Microorganisms in the Aquatic



  • 2.5.1 Cultural Methods

  • 2.5.2 Direct Methods

  • 2.5.2.1 Light Microscopy

  • 2.5.2.2 Electron Microscopy

  • 2.5.2.3 Flow Cytometry

  • 2.5.3 Determination of Bacterial Mass

  • 2.5.3.1 Direct Methods

  • 2.5.3.2 Indirect Methods......................................................

  • References

    • of Relevance to the Aquatic Environment 3 Aspects of the Molecular Biology of Microorganisms



  • 3.1 Protein Synthesis

  • 3.1.1 Transcription

  • 3.1.2 Translation

  • 3.2 The Polymerase Chain Reaction

    • Biotechnology 3.2.1 Some Applications of PCR in Environmental



  • 3.3 Microarrays

  • 3.3.1 Applications of Microarray Technology

  • 3.4 Sequencing of DNA

  • 3.4.1 Sequencing of Short DNA Fragments

  • 3.4.2 Sequencing of Genomes or Large DNA Fragments

  • 3.4.2.1 Use of Bacterial Artificial Chromosomes

  • 3.4.2.2 Use of the Shotgun Approach

  • 3.5 The Open Reading Frame and the Identification of Genes

  • 3.6 Metagenomics

  • References

  • 4 Taxonomy, Physiology, and Ecology of Aquatic Microorganisms

  • 4.1 Taxonomy of Microorganisms in Aquatic Environments

  • 4.1.1 Nature of Modern Taxonomy

  • 4.1.2 Evolution of the Classification of Living Things

  • 4.1.3 Determining Taxonomic Groups Within Domains

  • 4.1.3.1 Definition of Species

  • 4.1.3.2 Nomenclature of Biological Objects

    • Nucleic Acid, and Chemical Properties................ Morphological, Physiological,



  • 4.1.4 Bacteria Contents xi

  • 4.1.4.1 Taxonomic Groups Among Bacteria

    • in the Aquatic Environment Ecology of Microorganisms



  • 4.1.5 Archae

  • 4.1.5.1 General Properties of Archaea

  • 4.1.5.2 Taxonomic Groups Among Archeae

  • 4.1.6 Microbial Taxonomic Groups Among Eucharia

  • 4.1.6.1 Protozoa

  • 4.1.6.2 Fungi

  • 4.1.6.3 Algae

  • 4.1.7 Viruses

  • 4.1.7.1 Viral Taxonomy and Nomenclature

  • 4.1.7.2 The Viral Groups

  • 4.1.7.3 Bacteriophages in the Aquatic Environment

    • in Aquatic Systems 4.1.8 Small Multicellular Macroorganisms



  • 4.1.8.1 Crustaceans (Including Rotifers)

  • 4.1.8.2 Nematodes

  • References

  • 5 Ecology of Microorganisms in Freshwater Part III The Ecology of Microorganisms in Natural Waters

  • 5.1 Microbial Ecology of Atmospheric Waters

  • 5.2 Microbial Ecology of Surface Waters

  • 5.2.1 Rivers and Streams

  • 5.2.2 Lakes and Ponds

  • 5.2.3 Wetlands

  • 5.3 Ground Waters

  • 5.4 Some Microorganisms Usually Encountered in Fresh Water

  • 5.4.1 Bacteria

  • 5.4.1.1 New Data Regarding Freshwater Bacteria

  • 5.4.1.2 Some Bacteria in Freshwater

  • 5.4.2 Fungi

  • 5.4.3 Algae

  • 5.4.4 Protozoa

    • Materials Added to Aquatic Systems 5.5 Succession of Organisms in the Breakdown

      • Microbial Ecology 5.5.1 The Physiological Basis of Aquatic





  • 5.6 Microbial Loop and the Food Web in a Freshwater System

  • References

  • 6 Ecology of Microorganisms in Saline Waters (Seas and Oceans)

  • 6.1 The Ocean Environment

  • 6.2 Some Properties of Sea Water

  • 6.2.1 Salinity

  • 6.2.2 Temperature

  • 9.3.14 Miscellaneous Treatments Water Purification

  • 9.3.14.1 Plumbosolvency Removal.................................

  • 9.3.14.2 Radium (Radioactivity) Removal

  • 9.3.14.3 Reverse Osmosis

  • 9.3.14.4 Ion Exchange

  • 9.3.14.5 Electrodeionization

  • 9.4 Purification of Bottled Water

  • 9.5 Standards Required of Water

  • 9.5.1 Standards Required for Drinking Water

  • 9.5.1.1 The Microbiological Standards

  • 9.5.1.2 Turbidity

  • 9.5.1.3 Chemical Standards

  • 9.5.2 Standards Required for Recreational Waters

    • Harvesting Waters 9.5.3 Standards Required for Shellfish



  • References

  • 10 Waste Disposal in the Aqueous Medium: Sewage Disposal Part V Waste Disposal in Aquatic and Solid Media

  • 10.1 Nature of Wastes

    • in Sewage and Wastewaters 10.2 Methods for the Determination of Organic Matter Content



  • 10.2.1 Determination of Dissolved Oxygen

    • Demand Test............................ 10.2.1.1 The Biological or Biochemical Oxygen



  • 10.2.1.2 Permanganate Value Test

  • 10.2.1.3 Chemical Oxygen Demand

  • 10.2.1.4 Total Organic Carbon

  • 10.2.1.5 Total Suspended Solids

  • 10.2.1.6 Volatile Suspended Solids

  • 10.3 Systems for the Treatment of Sewage..............................................

  • 10.3.1 Aerobic Breakdown of Raw Waste Waters

  • 10.3.1.1 The Activated Sludge System

  • 10.3.1.2 The Trickling Filter...........................................

  • 10.3.1.3 Rotating Discs

  • 10.3.1.4 Oxidation Ponds

  • 10.3.2 Anaerobic Sewage Systems

    • Anaerobic Breakdown of Sludge Aerobic Sewage Treatment Systems:



  • 10.3.2.2 The Septic Tank

  • 10.3.2.3 The Imhoff Tank

  • 10.3.2.4 Cesspools

  • 10.4 Advanced Wastewater Treatment.....................................................

  • 10.4.1 Methods Used in Advanced Wastewater Treatment

  • References

  • 11 The Disposal of Municipal Solid Wastes xvi Contents

  • 11.1 The Nature of Wastes in General

  • 11.2 The World-Wide Development of Interest in the Environment

    • of the Environment of World-Wide Interest in the Protection



  • 11.2.2 Environmental Regulation in the European Union

  • 11.2.3 Environmental Regulations in Japan

  • 11.2.4 Governmental Regulation of the Environment in Ghana

  • 11.2.5 Egypt’s Environmental Affairs Agency

  • 11.3 Nature of Municipal Solid Wastes

  • 11.3.1 Integrated Solid Waste Management

  • 11.3.1.1 Source Reduction

  • 11.3.1.2 Recycling

  • 11.3.1.3 Incineration with Energy Recovery

  • 11.3.1.4 Composting

  • 11.3.1.5 Landfills Used in the Disposal of MSW

    • (and Aquatic Sediments) 11.4 Anaerobic Breakdown of Organic Matter in Landfills



  • 11.4.1 Some Properties of Methanogens

  • 11.4.2 Landfill Gas

  • 11.4.2.1 Landfill Methane Capture Technology

  • 11.5 Options for Municipal Solid Wastes Management

  • References

  • Index

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