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(2021);https://doi.org/10.5281/zenodo.5512994.ACKNOWLEDGMENTS
We thank the Oxford Big Data research computing team, specifically
A. Huffman and R. Esnouf, as well as D. Lieberman, K. Lohse,
and E. Castedo Ellerman for comments.Funding:This work was
supported by Wellcome Trust grant 100956/Z/13/Z (to G.M.),
the Li Ka Shing Foundation (to G.M.), the Robertson Foundation
(to J.K.), the Rhodes Trust (to A.W.W.), NIH (NIGMS) grant
GM100233 (to D.R.), the Paul Allen Foundation (to D.R.), the
John Templeton Foundation grant 61220 (to D.R.), and the Howard
Hughes Medical Institute (to D.R.). The computational aspects
of this research were supported by the Wellcome Trust (core award
203141/Z/16/Z) and the NIHR Oxford BRC. The views expressed
are those of the authors and not necessarily those of the NHS,
the NIHR, or the Department of Health.Author contributions:
Conceptualization: A.W.W., Y.W., J.K., and G.M. Methodology:
A.W.W., Y.W., A.A., S.M., N.P., J.K., and G.M. Software: A.W.W., Y.W.,
and J.K. Investigation: A.W.W., Y.W., B.J., R.P., and D.R. Formal
analysis: A.W.W., Y.W., B.J., A.A., and S.M. Validation: A.W.W.,
Y.W., and B.J. Visualization: A.W.W., Y.W., and B.J. Data curation:
A.W.W., Y.W., B.J., A.A., and S.M. Resources: A.W.W., Y.W., A.A.,
S.M., R.P., D.R., and J.K. Funding acquisition: D.R., J.K., and
G.M. Project administration: A.W.W. and D.R. Supervision: Y.W.,
D.R., J.K., and G.M. Writing–original draft: A.W.W., Y.W., and
G.M. Writing–review and editing: A.W.W., Y.W., D.R., J.K., and G.M.
Competing interests:G.M. is a director of and shareholder in
Genomics plc and a partner in Peptide Groove LLP. The authors
declare no other competing interests.Data and materials
availability:Newly reported sequencing data from the Afanasievo
family are available from the European Nucleotide Archive,
accession number PRJEB43093, and phased variant data for the
family are available from the European Variation Archive, accession
number PRJEB46983. All publicly available datasets used in
this paper are available from their original publications.tsinfer
is deposited to Zenodo ( 30 ) and is available athttps://tsinfer.
readthedocs.io/under the GNU General Public License v3.0,tsdate
is deposited to Zenodo ( 31 ) and is available athttps://tsdate.
readthedocs.io/under the MIT License, andtskitis deposited
to Zenodo ( 174 ) and is available athttps://tskit.readthedocs.io/
under the MIT License. All code used to perform analyses in
this paper is deposited to Zenodo ( 175 ) and can be found at
https://github.com/awohns/unified_genealogy_paper. Unified
tree sequences of the HGDP, SGDP, and TGP autosomes are
available from Zenodo ( 176 ). Unified tree sequences of the HGDP,
SGDP, TGP, and high-coverage ancient autosomes are available
from Zenodo ( 177 ). Tree sequences were compressed using the
tsziputility; see the documentation athttps://tszip.readthedocs.io/
for further details.SUPPLEMENTARY MATERIALS
science.org/doi/10.1126/science.abi8264
Materials and Methods
Supplementary Text
Figs. S1 to S21
Tables S1 to S3
References ( 178 Ð 208 )
Movie S19 April 2021; accepted 23 December 2021
10.1126/science.abi8264Wohnset al.,Science 375 , eabi8264 (2022) 25 February 2022 9of9
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