BioPHYSICAL chemistry

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Problems


5.1 At equilibrium, what can be said about the Gibbs energy?
5.2 For a spontaneous process at constant pressure, will the change in Gibbs energy be positive,
negative, or zero?
5.3 For a process with two components, what can be said about the Gibbs energy when the
mole fractions are equal?
5.4 If the equilibrium constant is strongly temperature-dependent, what can be said about the
relative entropic and enthalpic contributions to the Gibbs energy?
5.5 If the equilibrium constant is independent of temperature, what can be said about the
relative entropic and enthalpic contributions to the Gibbs energy?
5.6 In the reaction CH 3 COO−+H 2 O ↔CH 3 COOH +OH−state whether each species is acting
as a base, acid, neither, or both.
5.7 Calculate the pH for a solution with an H 3 O+molar concentration of (a) 10−^5 M and (b) 10−^9 M.
5.8 The equilibrium constant for a particular electrochemical reaction is 0.5. Is the standard-
reaction Gibbs energy greater than zero, less than zero, zero, or undetermined?
5.9 At equilibrium, for the reaction A ↔B, the final concentration of A is twice that of B.
What can be said about the Gibbs energy for this reaction at equilibrium?
5.10 After 100 mL of 0.1 M NaOH is added to 900 mL of a solution containing 0.03 mol of acetic
acid (CH 3 COOH, pKA=4.75) and 0.02 mol of NaCl, what is the pH of the final solution?
5.11 Acetic acid is a weak acid with a pKAof 4.75. What is the pH of a solution prepared by
adding 0.1 mol of acetic acid and 0.03 mol of NaOH to water at a final volume of 1 L?
5.12 After adding 0.01 M HCl to distilled water that is initially at pH 7, what is the final pH?
5.13 An isoelectric pH is the pH at which the molecule has no net average charge. What is the
isoelectric pH of glycine?
5.14 A 25-mL solution has a strong base at 0.15 M. What is the initial pH?
5.15 The buffer Tris, or tris(hydroxymethyl)aminomethane, has a pKAof 8.3. At what pH would
this buffer have equal molar concentrations of Tris and its conjugate base?
5.16 Why is electron transfer often coupled to proton transfer?


112 PARTI THERMODYNAMICS AND KINETICS


Garcia-Viloca, M., Gao, J., Karplus, M., and Truhlar,
D.G. (2004) How enzymes work: analysis by
modern rate theory and computer simulations.
Science 303 , 186 –95.
Graige, M.S., Paddock, M.L., Bruce, J.M., Feher, G.,
and Okamura, M.Y. (1996) Mechanism of proton-
coupled electron transfer for quinone (QB) reduc-
tion in reaction centers of Rb. sphaeroides. Journal
of the American Chemical Society 118 , 9005 –16.
Liang, Z.X. and Klinman, J.P. (2004) Structural
bases of hydrogen tunneling in enzymes: progress
and puzzles. Current Opinion in Structural Biology 14 ,
648 –55.
Olsson, M.H.M., Sharma, P.K., and Warshel, A.
(2005) Simulating redox coupled proteon transfer


in cytochrome c oxidase: looking for the proton
bottleneck. FEBS Letters 579 , 2026 –34.
Paddock, M.L., Feher, G., and Okamura, M.Y.
(2003) Proton transfer pathways and mechanism
in bacterial reaction centers. FEBS Letters 555 ,
45 –50.
Tanner, C., Manca, C., and Leutwyler, S. (2003)
Probing the threshold to H atom transfer along
a hydrogen bonded ammonia wire. Science 302 ,
1736 –9.
Taraphder, S. and Hummer, G. (2003) Protein side-
chain motion and hydration in proton-transfer
pathways. Results for cytochrome P450cam.
Journal of the American Chemical Society 125 ,
3931– 40.
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