The Lotus japonicus Genome

Table 17.1

Detailed description of Lotus published transcriptomes present in LjGEA Web server

LjGEA ID

Description

Replicate

Organ

Type of analysis

Treatment

Genotype

Culture system

Reference

Plant organ

Fl

Flower

3

Flower

Standard

Fully open

flower

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Leaf

Leaf

3

Leaf

Standard

28-day-old plants

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Root0 h

Root

3

Nodulesusceptiblezone

Standard

Low nitrogen (0.5 mMKNO

) collected pre- 3

inoculation with

M.

loti

MAFF1021

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Nod21

Nod 21dpi

3

Nodule

Standard

Low nitrogen (0.5 mMKNO

) collected 21 3

days post-inoculationwith

M. loti

MAFF1021

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Pt

Petiole

3

Petiole

Standard

28-day-old plants

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Root

Root

3

Root

Standard

28-day-old plants

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Plant organ

Stem

Stem

3

stem

Standard

28-day-old plants

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Poddevelopment

Pod10

Pod 10dap

3

Pod + seed

Standard

Pod development timecourse

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Poddevelopment

Pod14

Pod 14dap

3

Pod + seed

Standard

Pod development timecourse

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Poddevelopment

Pod20

Pod 20dap

3

pod + seed

Standard

Pod development timecourse

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Seeddevelopment

Seed10d

Seed 10dap

3

Seed

Standard

Seed developmenttime course

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Seeddevelopment

Seed12d

Seed 12dap

3

Seed

Standard

Seed developmenttime course

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Seeddevelopment

Seed14d

Seed 14dap

3

Seed

Standard

Seed developmenttime course

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Seeddevelopment

Seed16d

Seed 16dap

3

Seed

Standard

Seed developmenttime course

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Seeddevelopment

Seed20d

Seed 20dap

3

Seed

Standard

Seed developmenttime course

Lotus japonicus MG22

Turface +Clay

Verdieret al. (

2013

)

Species

L.burttii_Ctrol

L.burttii_Ctrol

3

Shoot

Ecotype

32-day-old plant

—

whole shoot

Lotus burttii

Soil

Sanchezet al. (

2011

)

Species

L.corniculatus_Ctrol

L.corniculatus_Ctrol

3

Shoot

Ecotype

32-day-old plant

—

whole shoot

Lotus corniculatus

Soil

Sanchezet al. (

2011

)

(continued)

186 J. Verdier et al.