The Lotus japonicus Genome

Table 21.3

(continued)

Description

Genesymbol

Predicted genelocation

Release 3.0predicted gene

Eco-type

pre- screen

Mis-sense

Prematurestop

Splicejunction

non-coding

silent

Totalmutationsper gene

GenbankProtein ID.

Referencefor gene

ReferenceforTILLINGmutants

or Reverse

Dicer-like 2

chr6.CM0437.480.r2.m

Lj6g1629810.1

G

R

3

0

1

0

1

5

n/e

Bustos-Sanmamed et al. 2013

Digalactosyldiacylglycerolsynthase 1

DGD1

chr1.CM0029.370.r2.d

Lj1g4741430.1

G

R

7

1

0

0

1

9

AAT67422.1

Gaude et al. 2004

Digalactosyldiacylglycerolsynthase 2

DGD2

chr1.CM0284.340.r2.d

Lj1g2627380.1

G

R

7

0

0

3

2

12

AAT67423.1

Gaude et al. 2004

DNA polymerase epsilon,catalytic subunit

chr3.CM1144.290.r2.m

Lj3g2995970.1

G

R

3

0

0

3

4

10

n/e

E3 Ubiquitin ligase

SINA1

chr1.CM0105.860.r2.m

Lj1g5034850.1

G

R

3

0

0

7

1

11

CCG06551.1

Den Herder etal. 2012

E3 Ubiquitin ligase-likeprotein

SINA2

chr1.LjT05B18.80.r2.d

Lj1g4372170.1

G

R

3

0

0

3

1

7

CCG06552.1

Den Herder et al. 2012

ENOD promoter DNAbinding protein, jumonjidomain

chr1.LjT26E16.120.r2.m

Lj1g0725870.1

G

F

1

0

0

1

2

4

n/e

Ethylene receptor

chr3.CM0634.490.r2.m

Lj3g0461750.1

G

R

25

1

1

5

4

36

n/e

Ethylene response sensor

chr1.CM0122.2470.r2.m

Lj1g4865380.1

G

R

26

0

0

5

8

39

n/e

FAD linked oxidase

chr6.CM0778.220.r2.d

Lj5g0692300.1

G

R

7

1

0

5

1

14

n/e

Glucan water dikinase 3

chr5.LjT42F22.160.r2.m

Lj5g2302970.1

G

R

19

0

0

0

7

26

n/e

Vriet et al. 2010

GRAS family protein

NSP1

chr3.CM0416.1260.r2.d

Lj3g2579340.1

G

F

2

0

0

0

1

3

ABK35066.1

Perry etal. 2009

GRAS family protein

NSP2

chr1.CM 1976.90.r2.m

Lj1g0785930.1

G

F

3

1

0

0

1

5

ABG49438.1

Perry etal. 2009

GRAS family transcriptionfactor

LjT15C06.70.r2.m

Lj0g0017249.1

G/M

R

27

3

0

0

10

40

n/e

High af

finity ammonium

transporter

AMT2

LjSGA_014720.1

Lj0g0115479.

G

R

3

4

0

0

1

8

ACQ91094.1

Guether etal. 2009

His-Asp phosphotransmitter

chr6.CM0139.1730.r2.m

Lj6gl915980.2

G

F/R

5

0

0

3

0

8

n/e

Histidine kinase

HK2

chr2.LjBHM03.80.r2.m

Lj2g0136400.1

G

R

5

1

0

2

2

10

ABI48270.1

Murray et al. 2007

Histidine kinase

chr2.CM0191.270.r2.a

Lj2g3338860.2

G

R

10

0

0

2

5

17

n/e

Histone deacetylase

chr4.CM0680.20.r2.m

Lj4g2742710.1

M

R

6

0

0

1

2

9

n/e

Ion channel protein

CASTOR

chr1.CM0105.1940.r2.m

Lj1g5061360.1

G

F

10

1

1

3

0

15

BAD89021.1

Perry etal. 2009

Ion channel protein

POLLUX

chr6.CM0508.260.r2.m

Lj6g2275010.2

G

F

11

3

2

5

2

23

BAD89022.1

Perry etal. 2009

Lipopolysaccharide Bindingprotein

chr2.CM0667.100.r2.a

Lj2g3224210.1

G

R

2

2

0

1

1

6

n/e

(continued)

236 T.L. Wang and F. Robson