Table 3.1
Selected
L. japonicus
microsatellite (simple sequence repeat,
SSR
) markers distributed over the six chromosomes (Chr.). The position is shown in centiMorgan (cM).
The quality of the markers is shown on the right side (
g
good,
vg
very good)
SSR pattern
Product size (bp)
Chr. Position Clone
Motif
Repeat numbersin MG-20
MG-20 Gifu Heteroduplex Extra bands
Separation Amplify Quality
1
0.0
TM0027 CT
33
178
158
––
vg
g
g
1
8.8
TM0050 GT
11
149
165
180
ggg
1
31.4
TM0575 AT
23
124
110
––
ggg
1
50.1
TM0113 AAT
16
135
123
––
ggg
1
69.0
TM0295 CT
14
116
140
––
vg
g
g
2
15.6
TM0065 AT
12
114
124
130
ggg
2
29.0
TM0377 CT
32
140
122
––
gfg
2
42.8
TM0608 AT
18
153
141
––
ggg
2
61.4
TM0522 AT
24
173
153
––
vg
g
g
2
70.6
TM0002 CT
15
159
179
––
vg
g
vg
3
10.5
TM0436 ATG
8
142
160
––
ggg
3
30.0
TM0035 AAG
17
110
95
70
g
g
g
3
56.7
TM0049 AT
14
141
159
––
vg
g
g
3
84.8
TM0127 AAG
7 + 5
131
119
––
ggg
4
5.6
TM0256 AAAT
7
142
166
––
vg
g
g
4
19.3
TM0194 CT
17
122
156
––
vg
g
g
4
33.0
TM0030 AAT
18
142
121
100 (weak)
vg
g
vg
4
55.4
TM0046 CT
16
155
143
––
ggg
4
69.3
TM0617 CT
13
134
122
––
ggg
5
10.4
TM0596 CT
9
106
116
––
ggg
5
29.0
TM0048 AT
12
162
146
––
ggg
5
48.6
TM0428 GT
15
143
157
161
ggg
6
16.0
TM0302 CT
17
143
169
––
vg
g
g
6
38.5
TM0013 AT
20
206
216
176(Gifu), 166(MG-20) g
g
g
6
48.6
TM0367 CT
27
172
152
––
vg
g
g
6
59.6
TM0336 CT
11(GT) + 14
164
180
––
ggg
24 N. Sandal and S. Sato