- Y.S. Sanghvi and P.D. Cook (eds), Carbohydrate modifications in antisense research. ACS Symp. Ser.,
Vol. 580, American Chemical Society, Washington, DC, 1994. - P.E. Nielsen (ed), Oligonucleotide antisense. Biochim. Biophys. Acta, 1999, 1489 , 1–206.
- A.M. Lane, S. Ebel and T. Brown, NMR assignments and solution conformation of the DNA:RNA
hybrid d(GCGAACTT).r(AAGUUCAC). Eur. J. Biochem., 1993, 213 , 297–306. - O.Y. Fedoroff, M. Salazar and B.R. Reid, Structure of a DNA:RNA hybrid duplex, Why RNase H
does not cleave pure RNA. J. Mol. Biol., 1993, 233 , 509–523. - M. Nowotny, S.A. Gaidamakov, R.J. Crouch and W. Yang, Crystal structures of RNase H bound to an
RNA/DNA hybrid: substrate specificity and metal-dependent catalysis. Cell, 2005, 121 , 1005–1016. - S.G. Sarafianos, K. Das, C. Tantillo, A.D. Clark Jr., J. Ding, J.M. Whitcomb, P.L. Boyer, S.H. Hughes and
E. Arnold, Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:
DNA, EMBO J., 2001, 20 , 1449–1461. - J.A. Jaeger, J. SantaLucia and I. Tinoco, Determination of RNA structure and thermodynamics. Ann.
Rev. Biochem., 1993, 62 , 255–287. - P.R. Schimmel, D. Söll and J.N. Abelson, Transfer RNA: Structure and dynamics of RNA. NATO ASI
Series. Plenum, New York, 1979. - S.M. Ereler, R. Kierzek, J.A. Jaeger, N. Sugimoto, M.H. Caruthers, T. Neilson and D.H. Turner,
Improved free energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. USA,
1986, 83 , 9373–9377. - J.A. McCammon and S.C. Harvey, Dynamics of Proteins and Nucleic Acids. Cambridge University
Press, Cambridge, 1987. - K.J. Breslauer, R. Frank, H. Blöcker and L.A. Marky, Predicting DNA duplex stability from base
sequence. Proc. Natl. Acad. Sci. USA, 1986, 83 , 3746–3750. - J.G. Wetmur, Hybridization and renaturation kinetics of nucleic acids. Ann. Rev. Biophys. Bioeng.,
1976, 5 , 337–361. - T.L. James, Relaxation behaviour of nucleic acids, in Phosphorus-31 NMR, D.G. Gorenstein (ed),
Academic Press, New York, 349–400. - D.M. Soumpasis and T.M. Jovin, Energetics of the B–Z transition, in Nucleic Acids and Molecular
Biology, Vol. 1, F. Eckstein and D.M.J. Lilley (eds), Springer, Heidelberg, 85–111. - M. Guéron and J.-P. Demaret, A simple explanation of the electrostatics of the B-to-Z transition of
DNA. Proc. Natl. Acad. Sci. USA, 1992, 89 , 5740–5743. - Cold Spring Harbor Symposia, Chromatin. Cold Spring Harbor Symp. Quant. Biol., 1978, 42 , 1–1353.
- K. Luger, A.W. Mäder, R.K. Richmond, D.F. Sargent and T.J. Richmond, Crystal structure of the
nucleosome core particle at 2.8 Å resolution. Nature, 1997, 389 , 251–260. - T.J. Richmond and C.A. Davey, The structure of DNA in the nucleosome core. Nature, 2003, 423 ,
145–150. - D.S. Pederson, F. Thorma and R.T. Simpson, Core particles, fibre and transcriptionally active
chromatin structure. Ann. Rev. Cell Biol., 1986, 2 , 117–147. - A.A. Travers and A. Klug, The bending of DNA in nucleosomes and its wider implications. Phil.
Trans. Roy. Soc. Lond. B, 1987, 317 , 537–561. - A.A. Travers, DNA conformation and protein binding. Ann. Rev. Biochem., 1989, 58 , 427–452.
- E.U. Selker, DNA methylation and chromatin structure: a view from below. Trends Biol. Sci., 1990,
15 , 103–107. - M.B. Schmid, Structure and function of the bacterial chromosome. Trends Biol. Sci., 1988, 13 ,
131–135. - M. Egli, Nucleic acid crystallography: current progress. Curr. Opin. Chem. Biol., 2004, 8 , 580–591.
- P.J. Paukstelis, J. Nowakowski, J.J. Birkoft and N.C. Seeman, Crystal structure of a continuous three-
dimensional DNA lattice. Chem. Biol., 2004, 11 , 1119–1126. - M. Egli, “Deoxyribo nanonucleic acid”: antiparallel, parallel and unparalleled. Chem. Biol., 2004, 11 ,
1027–1029.
74 Chapter 2