Computational Methods in Systems Biology

(Ann) #1
KADE: A Tool to Compile Kappa Rules into (Reduced) ODE Models 299


  1. Camporesi, F., Feret, J., L ́y, K.Q.: KaDE: a tool to compile kappa rules into
    (reduced) ode models: Supplementary information.http://www.di.ens.fr/∼feret/
    CMSB2017-tool-paper/

  2. Petrov, T., Feret, J., Koeppl, H.: Reconstructing species-based dynamics from
    reduced stochastic rule-based models. In: Laroque, C., Himmelspach, J., Pasu-
    pathy, R., Rose, O., Uhrmacher, A.M. (eds.) Proceedings of WSC 2012, WSC
    (2012)

  3. Oury, N., Pedersen, M., Petersen, R.L.: Canonical labelling of site graphs. In Petre,
    I. (ed.) Proceedings of CompMod 2013, EPTCS, vol. 116, pp. 13–28 (2013)

  4. Cardelli, L., Tribastone, M., Tschaikowski, M., Vandin, A.: Forward and back-
    ward bisimulations for chemical reaction networks. In: Aceto, L., de Frutos-Escrig,
    D. (eds.) Proceedings of CONCUR 2015, vol. 42, pp. 226–239. LIPIcs., Schloss
    Dagstuhl (2015)

  5. Cardelli, L., Tribastone, M., Tschaikowski, M., Vandin, A.: Efficient syntax-driven
    lumping of differential equations. In: Chechik, M., Raskin, J.-F. (eds.) TACAS
    2016. LNCS, vol. 9636, pp. 93–111. Springer, Heidelberg (2016). doi:10.1007/
    978-3-662-49674-9 6

Free download pdf