Part III: Conservation and Management386
References
Ai, H., Fang, X., Yang, B., et al. (2015).
Adaptation and possible ancient
interspecies introgression in pigs
identified by whole-genome sequencing.
Nature Genetics 47: 217–225.
Amaral, A. J., Megens, H. J., Crooijmans,
R. P. M. A., Heuven, H. C. M. & Groenen
M. A. M. (2008). Linkage disequilibrium
decay and haplotype block structure in
the pig. Genetics 179: 569–579.
Artois, M., Depner, K. R., Guberti, V.,
et al. (2002). Classical swine fever (hog
cholera) in wild boar in Europe. Scientific
and Technical Reviews 21: 287–303.
Balick, D. J., Do, R., Cassa, C. A., Reich, D.
& Sunyaev, S. R. (2015). Dominance of
deleterious alleles controls the response
to a population bottleneck. PLoS Genetics
11: e1005436.
Booth, W. D. (1995). Wild boar farming in
the United Kingdom. IBEX Journal of
Mountain Ecology 3: 245–248.
Bosse, M. (2015). The hybrid nature of pig
genomes: unraveling the mosaic haplotype
structure in wild and commercial Sus
scrofa populations. Doctoral thesis.
Wageningen University. Retrieved from
http://edepot.wur
.nl/338856.
Bosse, M., Megens, H. J., Madsen, O., et al.
(2012). Regions of homozygosity in
the porcine genome: consequence of
demography and the recombination
landscape. PLoS Genetics 8: e1003100.
Bosse, M., Madsen, O., Megens, H. J., et al.
(2014a). Hybrid origin of European
commercial pigs examined by an in-depth
haplotype analysis on chromosome 1.
Frontiers in Genetics 5: 442.
Bosse, M., Megens, H. J., Frantz, L. A. F.,
et al. (2014b). Genomic analysis reveals
selection for Asian genes in European
pigs following human-mediated
introgression. Nature Communications
5: 4392.
Bosse, M., Megens, H. J., Madsen, O., et al.
(2014c). Untangling the hybrid nature of
modern pig genomes: a mosaic derived
from biogeographically distinct and
highly divergent Sus scrofa populations.
Molecular Ecology 23: 4089–4102.
(2015). Using genome-wide measures
of coancestry to maintain diversity and
fitness in endangered and domestic
pig populations. Genome Research 25:
970–981.
Cahill, S., Llimona, F. & Gràcia, J. (2003).
Spacing and nocturnal activity of wild
boar Sus scrofa in a Mediterranean
metropolitan park. Wildlife Biology 9
(Suppl. 1): 3–13.
Conedera, G., Ustulin, M., Barco, L., et al.
(2014). Outbreak of atypical Salmonellacholeraesuis in wild boars in North
Eastern Italy. In Paulsen, P., Bauer, A.
& Smulders, F. J. M. (eds.), Trends in
game meat hygiene: from forest to fork.
Wageningen: Wageningen Academic
Publishers, pp. 151–160.
Delibes-Mateos, M. & Delibes, A. (2013).
Pets becoming established in the wild:
free-living Vietnamese potbellied
pigs in Spain. Animal Biodiversity and
Conservation 36: 209–215.
Fang, M. & Andersson, L. (2006).
Mitochondrial diversity in European
and Chinese pigs is consistent with
population expansions that occurred
prior to domestication. Proceedings of the
Royal Society B 273: 1803–1810.
Fernández, A. I., Muñoz, M., Alves, E., et al.
(2014). Recombination of the porcine X
chromosome: a high density linkage map.
BMC Genetics 15: 148.
Ferreira, E., Souto, L., Soares, A. M. V. M. &
Fonseca, C. (2009). Genetic structure of
the wild boar population in Portugal:
evidence of a recent bottleneck.
Mammalian Biology 74:274–285.
Fisher, R. A. (1930). The genetical theory
of natural selection. Oxford: Clarendon
Press.
Fonseca, C. (2004). Population dynamics and
management of wild boar (Sus scrofa L.)
in Central Portugal and Southeastern
Poland. Doctoral thesis. University of
Aveiro, Portugal.
Frantz, A. C., Zachos, F. E., Kirschning, J.,
et al. (2012). Genetic evidence for
introgression between domestic pigs and
wild boars (Sus scrofa) in Belgium and
Luxembourg: a comparative approach
with multiple marker systems. Biological
Journal of the Linnean Society 110:
104–115.
Frantz, L. A. F. (2015). Speciation and
domestication in Suiformes: a genomic
perspective. Doctoral thesis. Wageningen
University.
Frantz L. A. F., Schraiber, J. G., Madsen, O.,
et al. (2013). Genome sequencing reveals
fine scale diversification and reticulation
history during speciation in Sus. Genome
Biology 14: R107.
Frantz, L. A. F., Madsen, O., Megens, H. J.,
Groenen, M. A. M. & Lohse, K.
(2014). Testing models of speciation
from genome sequences: divergence
and asymmetric admixture in Island
South-East Asian Sus species during the
Plio–Pleistocene climatic fluctuations.
Molecular Ecology 23: 5566–5574.
Frantz, L. A., Schraiber, J. G., Madsen, O.,
et al. (2015a). Evidence of long-term gene
flow and selection during domestication
from analyses of Eurasian wild anddomestic pig genomes. Nature Genetics
47: 1141–1148.
Frantz, L. A., Madsen, O., Megens, H. J., et al.
(2015b). Evolution of Tibetan wild boars.
Nature Genetics 47: 188–189.
Frantz, L., Meijaard, E., Gongora, J., et al.
(2016). The revolution of Suidae. Annual
Review of Animal Biosciences 4: 61–85.
Fu, Y. X. & Li, W. H. (1993). Statistical tests
of neutrality of mutations. Genetics 133:
693–709.
Funk, S. M., Verma, S. K., Larson, G., et al.
(2007). The pygmy hog is a unique genus:
19th century taxonomists got it right first
time round. Molecular Phylogenetics and
Evolution 45: 427–436.
Garza, J. C. & Williamson E. G. (2001).
Detection of reduction in population
size using data from microsatellite loci.
Molecular Ecology 10: 305–318.
Gattepaille, L. M., Jakobsson, M. & Blum, M. G.
(2013). Inferring population size changes
with sequence and SNP data: lessons
from human bottlenecks. Heredity 110:
409–419.
Ghigi, A. (1911). Ricerche faunistiche e
sistematiche sui mammiferi d’Italia che
formano oggetto di caccia. Natura 2:
289–337.
Giuffra, E., Kijas, J.M., Amarger, V., et al.
(2000). The origin of the domestic
pig: independent domestication and
subsequent introgression. Genetics 154:
1785–1791.
Goedbloed, D. J., Megens, H. J., Van Hooft, P.,
et al. (2013a). Genome-wide single
nucleotide polymorphism analysis
reveals recent genetic introgression from
domestic pigs into Northwest European
wild boar populations. Molecular Ecology
22: 856–866.
Goedbloed, D. J., van Hooft, P., Megens, H. J.,
et al. (2013b). Reintroductions and
genetic introgression from domestic
pigs have shaped the genetic population
structure of Northwest European wild
b o ar. BMC Genetics 14: 43.
Goedbloed, D. J., van Hooft, P., Lutz, W.,
et al. (2015). Increased Mycoplasma
hyopneumoniae disease prevalence in
domestic hybrids among free-living wild
b o ar. Ecohealth 12: 571–579.
Gortázar, C., Vicente, J., Fierro, Y., et al. (2002).
Natural Aujeszky’s disease in a Spanish
wild boar population. Annals of the New
York Academy of Science 969: 210–212.
Goulding M. (2011). Native or alien?
The case of the wild boar in Britain.
In Rotherham, I. D. & Lambert, R. A.
(eds.), Invasive and introduced plants and
animals. Human perceptions, attitudes and
approaches to management. Abingdon:
Earthscan from Routledge, pp. 289–300..03612:55:56