Caspases,Paracaspases, and Metacaspases Methods and Protocols

(Wang) #1

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3 Methods



  1. Transform BL21 (DE3) with the CED-3-expressing con-
    struct, inoculate a single transformed colony in 10 ml of LB
    medium containing 50 μg/ml ampicillin, and grow at 37 °C
    with shaking at 200 rpm overnight.

  2. Transfer 10 ml LB culture into 2 L of LB medium with 50 μg/
    ml ampicillin and incubate at 37 °C with shaking at 200 rpm
    until OD 600 of the culture reaches 0.5.

  3. As soon as the OD 600 of the bacterial culture reaches 0.5, place
    the culture on ice for 10 min.

  4. Add IPTG to the bacterial culture to a fi nal concentration of
    1 mM.

  5. Incubate the culture at room temperature with shaking at
    200 rpm for 4 h.

  6. Place the bacterial culture on ice for 10 min and spin down the
    cells at 4,500 × g for 10 min at 4 °C.

  7. Discard the supernatant and move the pellet immediately to
    −80 °C freezer for at least 1 h ( see Note 6 ).

  8. Resuspend the frozen pellet in 10 ml of the cold sonication
    buffer. This should be performed at 4 °C.

  9. Perform sonication to break up the resuspended cells until
    cleared lysate without viscosity is obtained ( see Note 7 ). It is
    important to keep the lysate at low temperature.

  10. Centrifuge the lysate at 18,000 × g , 4 °C, for 30 min and fi lter
    the supernatant using a syringe and a 0.45 μm fi lter.

  11. Place 0.3 ml bed volume of Ni-NTA resin in a plastic column
    and wash the resin with 2 ml of the washing buffer. After this
    step, all procedures should be performed at 4 °C.

  12. Load the fi ltered lysate onto the column and wait until all
    lysate has fl own out of the resin.

  13. Wash the column with 20 ml of the washing buffer ( see Note 8 ).

  14. Elute CED-3::His 6 from the resin by adding 1 ml of elution
    buffer 1. Repeat this procedure by adding 1 ml of elution buf-
    fer 2 and 1 ml of elution buffer 3 each ( see Note 9 ).

  15. Add 1 μl of purifi ed CED-3 into a total 19 μl of reaction
    mixture, which contains 5 μM Ac-Asp-Glu-Val-Asp-AMC ( see
    Note 10 ) and 10 μl of 2× CED-3 reaction buffer.

  16. Incubate at 30 °C for 1 h.

  17. Add 180 μl of distilled water.

  18. Measure the fl uorescent intensity using a UV spectrophotom-
    eter: Excitation 360, Emission 460.


3.1 Purifi cation of
Recombinant CED-3


3.2 Measuring
the Activity of
Recombinant CED-3


Eui Seung Lee and Ding Xue

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