Caspases,Paracaspases, and Metacaspases Methods and Protocols

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  1. The Bio-Rad Power Pac 3000 system or similar.

  2. Separating gel (12 %): mix 1.625 ml H 2 O, 2 ml 30 % acryl-
    amide–Bis-acrylamide solution (29.2:0.8 acrylamide–Bis-
    acrylamide), 1.3 ml 1.5 M Tris/HCl buffer, pH 8.8, 25 μl
    20 % SDS; 50 μl 10 % ammonium persulfate (APS) and 2 μl
    tetramethylethylenediamine (TEMED).

  3. Stacking gel (3.9 %): mix 2.64 ml H 2 O, 0.67 ml 30 % acryl-
    amide–Bis-acrylamide solution, 0.5 ml 1 M Tris/HCl buffer,
    pH 6.8, 20 μl 20 % SDS; 40 μl 10 % APS, 8 μl TEMED, and
    20 μl bromophenol blue.

  4. 4× Tris/HCl/SDS solution: 91 g Tris base, 2 g SDS, 500 ml
    H 2 O, pH 8.8.

  5. 2× SDS sample loading buffer (100 ml fi nal volume): 25 ml 4×
    Tris/HCl/SDS solution, 20 ml glycerol, 4 g SDS, 2 ml
    β-Mercaptoethanol (or 3.1 g DTT), 1 mg bromophenol blue,
    adjust to 100 ml with H 2 O.

  6. 10× SDS electrophoresis running buffer: 250 mM Tris base,
    1.92 M glycine, 1 % SDS. Adjust pH to pH 8.3 when diluting
    to 1×.

  7. Gel staining solution: 50 % methanol, 0.05 % Coomassie
    Brilliant Blue R-250, 10 % acetic acid.

  8. Gel destaining solution: 5 % methanol, 7 % acetic acid.

  9. The Bio-Rad Power Pac 3000 system or similar.

  10. 10× gel transfer buffer: 250 mM Tris base, 1.92 M glycine.

  11. 1× gel transfer buffer solution: 10 ml 10× gel transfer buffer,
    20 ml methanol, pH 8.3–8.4, adjust to 1 L with H 2 O.

  12. Nitrocellulose membrane (Whatman, GE Healthcare Life sci-
    ences or similar).

  13. Filter paper, cut to the size of the gel.

  14. Ponceau S Solution: 0.5 g Ponceau S, 1 ml glacial acetic acid,
    adjust to 100 ml with H 2 O.

  15. 1× Tris Buffered Saline supplemented with tween 20 (TBST):
    25 mM Tris, 150 mM NaCl, 3 mM KCl, pH 7.5, 0.1 %
    Tween 20.

  16. Blocking buffer: 1× TBST, 5 % nonfat dry milk (NFDM).

  17. Primary antibody: 1/200 anti-Flag antibody or 1/1,000 anti-
    Histidine antibody in TBST with 1 % NFDM.

  18. Secondary antibody: 1/2,500 horseradish peroxidase-
    conjugated antibody in TBST with 1 % NFDM.

  19. Glass plate.

  20. ECL Western Blotting Detection Reagent (GE Healthcare).


2.6 Sodium Dodecyl
Sulfate–
Polyacrylamide Gel
Electrophoresis
(SDS-PAGE)


2.7 Western Blotting


Leishmania Metacaspase
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