Caspases,Paracaspases, and Metacaspases Methods and Protocols

(Wang) #1

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  1. After staining, remove the membrane and place into the destain
    solution ( see Note 10 ).

  2. Wash the membrane on rocking platform for 10 min, changing
    solution every 5 min.

  3. After destaining, wash the membrane with water and dry
    completely.

  4. Analyze the resulting bands via densitometry (Fig. 1 ). (We use
    the ImageJ software for densitometry analyses.)

  5. Add 2 mL of DMF to 60 mg of dry M-270 epoxy Dynabeads.

  6. Vortex the beads for 2 min and keep at 4 °C. The beads may
    be stored indefi nitely at 4 °C.

  7. Vortex the stock of beads for 1–2 min and transfer 200 μL of
    beads into a microcentrifuge tube ( see Note 11 ).

  8. Place tube on magnetic stand to separate beads from DMF for
    1 min and discard the supernatant.

  9. Wash the beads with 1 mL of sodium phosphate buffer: gently
    resuspend the beads in the buffer by rotation and then place
    tube on magnet for 1 min.

  10. Discard supernatant and repeat step 5 for additional two times.

  11. Immediately, add 230 μL of sodium phosphate buffer to the
    dry beads.

  12. Add 10 μL of antibody (10 mg/mL stock concentration) to
    the mixture and vortex for 15 s.

  13. Add 120 μL of ammonium sulfate buffer to the mixture.

  14. Incubate the mixture at 37 °C for 16–24 h on a nutator.

  15. Following incubation, wash the beads four times with 1 mL of
    PBS as described in step 5.


3.5 Immuno-
precipitation


Fig. 1 Filter trap analyses of insoluble protein aggregates. Twofold serial dilutions
of the soluble (SOL) and insoluble (INS) protein fractions were fi ltered through a
0.45 μM PVDF membrane and stained with Coomassie Blue solution. The labels
on the right indicate the different dilutions (D1–D4)

Amit Shrestha et al.

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