Caspases,Paracaspases, and Metacaspases Methods and Protocols

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(d) Type peptographer.pl alldata.pmap and press <enter> (or
use the fi lename you renamed alldata.pmap to). It may take
some time to run, depending on the complexity of your
data and the speed of your CPU.


  1. If peptographer.pl completed successfully, a new folder called
    alldata was generated (or whatever your .pmap fi le was called).

  2. Open this folder in File Explorer and double-click on the
    PROTOMAP_Browser.html fi le. This will open a browser
    interface that should permit you to easily search or browse
    your peptographs (Fig. 4 ).


Fig. 4 The web-browser interface for viewing peptographs that is created upon successful completion of the
protomap.pl script


Global Identifi cation of Caspase Substrates
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