- Protein Structure Modeling 125
Figure 8. Evaluate model with ModEval. (a) Job submission form and (b) result page,
containing Dope score, GA341 score, and DOPE profile (the figure in the lower part of the
page) of the protein.
- PyMol software. Please install it before continuing reading. For
Microsoft Windows users, you may find pre-compiled pymol bina-
ries in http://www.lfd.uci.edu/ ̃gohlke/pythonlibs/#pymol or search for
“precompiled binary Windows” in your search engine. For Linux users,
you may consult your software repositories, or PyMol official site.
Procedure
I. Launch PyMol.
After launch, you will see a window for 3D model view and another
window with menu bar, lots of buttons and a large text area (Fig. 9).
Both windows are capable of receiving text commands.