November 8, 2017 17:31 A Practical Guide to Cancer Systems Biology 9.61in x 6.69in b3038-fm page v
Contents
Chapter 1 Introduction to Cancer Systems Biology 1
Hsueh-Fen Juan and Hsuan-Cheng Huang
Chapter 2 Transcriptome Analysis: Library Construction 11
Hsin-Yi Chang and Hsueh-Fen Juan
Chapter 3 Quantitative Proteome: The Isobaric Tags for
Relative and Absolute Quantitation (iTRAQ) 23
Yi-Hsuan Wu and Hsueh-Fen Juan
Chapter 4 Phosphoproteome: Sample Preparation 39
Chia-Wei Hu and Hsueh-Fen Juan
Chapter 5 Transcriptomic Data Analysis: RNA-Seq Analysis
Using Galaxy 49
Chia-Lang Hsu and Chantal Hoi Yin Cheung
Chapter 6 Proteomic Data Analysis: Functional Enrichment 63
Hsin-Yi Chang and Hsueh-Fen Juan
Chapter 7 Phosphorylation Data Analysis 75
Chia-Lang Hsu and Wei-Hsuan Wang
Chapter 8 Pathway and Network Analysis 91
Chen-Tsung Huang and Hsueh-Fen Juan
Chapter 9 Dynamic Modeling 103
Yu-Chao Wang
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