AMPK Methods and Protocols

(Rick Simeone) #1

  1. Surgical drill. Tungsten carbide drill (KOMPH141010 for
    stereotaxic surgery and KOMPH141014 for intracerebroven-
    tricular (ICV) surgery, Komet Dental).

  2. Cyanoacrylate adhesive.

  3. Gavage needle for rat (Fine Science Tools, Item No. 18061-
    10.)

  4. Hamilton syringe for ICV (Hamilton, model #7001N
    22 gauge).

  5. Hamilton syringe for rat stereotaxic administration (Hamilton,
    model #7001N 25 gauge).

  6. Hamilton syringe for mouse stereotaxic administration
    (Hamilton, model #7001KH 32 gauge).

  7. Osmotic minipumps (Alzet, models 2001, 1007D, 1004D).

  8. Stereotaxic frame.

  9. Silk suture (rat/mouse) 2-0/4-0.


2.2 Dissection
and Protein Extraction



  1. PBS (phosphate buffer saline): 138 mM NaCl, 2.7 mM KCl,
    1.5 mM KH 2 PO 4 , 8 mM Na 2 HPO 4 ·7H 2 O, pH 7.4.

  2. Precision scissors.

  3. Surgical blade stainless steel n15.

  4. Razor blades.

  5. 1 mm coronal acrylic brain matrix for rat or mouse.

  6. Lysis buffer with protease inhibitor (BLYSpi): 50 mM
    Tris–HCl, pH 7.5, 10 mM EGTA, 10 mM EDTA, 1% (v/v)
    M Triton X-100, 1 mM sodium orthovanadate, 50 mM
    sodium fluoride, 10 mM sodium pyrophosphate, 0.25 M
    sucrose, protease inhibitor cocktail. Store at 4C. Weight
    6.057 g Tris–HCl, 0.38 g EGTA, 0.37 g EDTA, 0.184 g
    sodium orthovanadate, 2.099 g sodium fluoride, 2.23 g
    sodium pyrophosphate, 85.5 g sucrose. Add 10 mL of Triton
    X-100. Make up to 1 L with distilled water. Mix and adjust
    pH 7.5 with HCl (seeNote 1). Use one tablet of protease
    inhibitor in 50 mL of lysis buffer (seeNote 2).

  7. Stainless steel grinding beads and bead mill homogenizer.

  8. 1 mg/mL bovine serum albumin (BSA) in distilled water.

  9. Bradford solution (protein assay dye reagent concentrate).
    Dilute in distilled water 1:4. Prepare enough for 250μL for
    each sample and standard in duplicate. Keep protected from
    light. Incubate 10 min at 37C before use.

  10. 96-well plate: clear plates for colorimetric assay.

  11. Microplater reader. Thermo Fisher multiskan go.


Methods for Brain AMPK 435
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