AMPK Methods and Protocols

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and add a magnetic stirrer and autoclave (seeNote 5). Add
250 mL of prewarmed medium 199 (37C) to autoclaved
methylcellulose, transfer the bottle to a sterile 60C water
bath, and incubate for 20 min interrupted by four to five
times stirring at room temperature (seeNote 6). Add 250 mL
of medium 199, and stir for 1 h at room temperature and then
overnight at 4C. Transfer the solution into 50 mL tubes, and
centrifuge for 2 h at 4000gat room temperature. Transfer
the upper 45 mL into new tubes using a pipette, and store at
4 C(seeNotes 7and 8 ).


  1. Trypsin/EDTA: 0.05% (w/v) trypsin, 0.02% (w/v) EDTA.

  2. Phosphate-buffered saline (PBS): 145 mM NaCl, 2.7 mM KCl,
    1.5 mM KH 2 PO 4 , 8 mM Na 2 HPO 4 ·2H 2 O, pH 7.4,
    autoclaved.

  3. Stop medium: Medium 199, 10% (v/v) FCS.

  4. Endothelial cell growth medium (see Subheading 2.1.1.,
    item 2).

  5. 96-well plates (round bottom, for suspension culture).

  6. Sterile 50 mL Falcon tubes.

  7. Pipettors, multistepper pipette.

  8. Cell culture incubator (seeSubheading 2.1.1.,item 8).


2.1.3 Embedding
and Stimulation of
Spheroids



  1. HEPES buffer: 10 mM HEPES-Na, pH 7.4, 145 mM NaCl,
    5 mM KCl, 1 mM MgSO 4 , 10 mM glucose. Sterilize by filtra-
    tion (seeNote 9).

  2. Aprotinin: 10,000 U/mL aprotinin. Dissolve 10,000 U in
    1 mL of sterile ddH 2 O, and store aliquots at 20 C(see
    Note 10).

  3. Fibrinogen: 3.5 mg/mL fibrinogen. Weigh approximately
    3.5 mg fibrinogen under sterile conditions into a U-shaped
    tube (seeNotes 11and 12 ). Add 1 mL of sterile prewarmed
    HEPES buffer (37C) to the rim of the tube, and let it
    carefully run down; do not mix (seeNote 13). Transfer the
    tube into a 37C water bath, and let the fibrinogen dissolve for
    4 h without agitation. Subsequently, mix the solution carefully,
    and determine protein content (seeNote 14). Dilute fibrino-
    gen to a concentration of 1.8 mg/mL with sterile HEPES
    buffer. Add 20μL of the antifibrinolytic agent aprotinin per
    1 mL.

  4. HEPES/Ca buffer: HEPES buffer plus 1.5 mM CaCl 2 , steril-
    ize by filtration.

  5. Thrombin: Dissolve 100 U in 1 mL of sterile ddH 2 O, and store
    aliquots at 20 C(seeNote 15).

  6. Spheroid growth medium: Medium 199, 2% (v/v) FCS,
    680 μM glutamine, 100 U/mL penicillin, 100μg/mL strep-
    tomycin (seeNote 16).


522 Katrin Spengler et al.

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