Antibiotic Resistance Protocols (Methods in Molecular Biology)

(C. Jardin) #1

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  1. Premixed BHI media made according to manufacturer’s
    instructions. Supplement with 15 g/L agar to make plates.
    Mix together with water and autoclave, then cool to approxi-
    mately 45 °C prior to adding appropriate antibiotics.

  2. Sterile PBS; commonly made by dissolving tablets in water
    then autoclaving.

  3. Dry ice (for snap-freezing samples).

  4. Suitable sterile tubes for bacterial aliquots (15 mL).

  5. Standard laboratory centrifuge (appropriate for 50 mL tubes at
    ~ 4000 × g).

  6. Standard laboratory vortex mixer.

  7. Premixed BHI media made according to manufacturer’s
    instructions, supplemented with 15 g/L agar to make plates.
    Mix together with water and autoclave, then cool to approxi-
    mately 45 °C prior to adding appropriate antibiotics.

  8. Sterile PBS; commonly made by dissolving tablets in water
    then autoclaving.

  9. Suitable sterile tubes for mixing bacterial inoculation (7 mL).

  10. Suitable sterile needles and syringes for mouse tail vein
    injection.

  11. Sterile tools for extracting organs for quantification of bacterial
    load.

  12. Automatic homogenizer (e.g., Peqlab PreCellys 24-Dual).

  13. Sterile 7 mL tubes containing 2.8 mm ceramic beads, compat-
    ible with homogenizer.


3 Methods


The workflow is summarized in Fig. 1.
For all plating/growth steps, use LB supplemented with anti-
biotics as indicated.


  1. Using standard techniques or software, design oligonucleotide
    primers to amplify the region of homology from the bacterial
    chromosome into which you wish to insert your antibiotic cas-
    sette (see Note 1). Include a unique restriction endonuclease
    recognition sequence at the 5′ end of each primer for insertion
    of the fragment into the vector.

  2. Amplify the DNA fragment with a high-fidelity polymerase
    and purify it using a commercial kit or similar technique (see
    Note 2).


2.4 In Vivo Studies:
Preparation
of Bacteria for Mouse
Infection


2.5 In Vivo Studies:
Mouse Infection
and Quantification
of Bacterial Load


3.1 Strain
Construction: Suicide
Vectors


Gareth McVicker et al.
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