Antibiotic Resistance Protocols (Methods in Molecular Biology)

(C. Jardin) #1
79


  1. Inoculate the bacterial strain of interest in 3–5 mL of appropri-
    ate growth medium according to its metabolic and environ-
    mental requirements.

  2. Inoculate 0.1 mL of an overnight culture in 8 mL of medium
    for 2 h at 37 °C to reach the exponential phase.

  3. Standardize bacterial suspensions by adjusting the concentra-
    tion of the inocula to ca. 2 × 107 bacteria/mL using OD 600.

  4. Dilute to a final concentration of 7.5 × 105 bacteria/mL.

  5. Load the bacterial suspension in a transparent flat bottom
    96-well plate.

  6. Prepare the antibiotic dilution range in growth medium using
    series of doubling dilution (e.g., 16, 8, 4, 2, 1, 0.5 μg/mL)
    and add a proper volume to each well.

  7. Centrifuge urine samples at 2400 × g for 5 min at room tem-
    perature to remove leukocytes and epithelial cells.

  8. Collect the supernatant, mix 50% (vol/vol) with CAMHBT
    and incubate for 2 h at 37 °C.

  9. Adjust bacterial concentration to 0.5 of the McFarland
    standard.

  10. Inoculate 0.1 mL in 11 mL of MH broth and mix
    thoroughly.

  11. Load the bacterial suspension in a transparent flat bottom 96
    well plate. Prepare the antibiotic dilution range in growth
    medium using series of doubling dilution (e.g., 16, 8, 4, 2, 1,
    0.5 μg/mL) and add a proper volume to each well.

  12. Centrifuge blood samples at 200 × g for 5 min to remove
    blood cells.

  13. Resuspend the bacterial pellet in CAMHBT and incubate for
    2 h at 37 °C.

  14. Inoculate 0.1 mL in 11 mL of MH broth and mix through.

  15. Load the bacterial suspension in a transparent flat bottom
    96-well plate.
    Prepare the antibiotic dilution range in growth medium using
    series of doubling dilution (e.g., 16, 8, 4, 2, 1, 0.5 μg/mL) and
    add a proper volume to each well.

  16. Place the oCelloScope in a standard laboratory incubator for
    biological applications for precise temperature regulation.
    Prior performing the AST experiment, it is recommended to
    let the instrument and the sample container equilibrate inside
    the incubator for at least 2 h. This step allows the prevention
    of condensation forming on the on the microtiter plate lid,


3.1 Guideline
for Preparation of Pure
Cultures of Bacterial
Strains


3.2 Guideline
for Preparation
of Urine Samples


3.3 Guideline
for Preparation
of Blood Samples


3.4 Automated
Time-Lapse Analysis
Using the oCelloScope
System


Real-Time Digital Bright Field Technology for Rapid Antibiotic Susceptibility Testing
Free download pdf