7.4 BLAST 173
Figure 7.5 BLAT output window.- MPBLAST: sets of small queries;
- MegaBLAST: greedy algorithm;
- WU-BLAST2: new version of WU-BLAST;
- BLAT: high-performance BLAST.
- Iterated BLAST:
- PSI-BLAST: iterate to construct new motifs;
- RPS-BLAST: reverse iterate to find a known motifs.
- Integrate BLAST with other search criteria:
- PHI-BLAST: combine with a pattern search;
- PathBLAST: compare protein interaction networks.