394 References
Baclawski, K., 1997a. Distributed computer database system and method. United
States Patent No. 5,694,593. Assigned to Northeastern University, Boston.
Baclawski, K. 1997b. Long time, no see: categorization in information science. In
S. Hecker and G.C. Rota (eds.),Essays on the Future. In Honor of the 80th Birthday of
Nick Metropolis, pp. 11–26. Cambridge, MA: Birkhauser.
Baclawski, K. 2003. Ontology development. Kenote address inInternational Workshop
on Software Methodologies, Tools and Techniques, pp. 3–26.
Baclawski, K., J. Cigna, M.M. Kokar, P. Mager, and B. Indurkhya. 2000. Knowledge
representation and indexing using the Unified Medical Language System. InPacific
Symposium on Biocomputing, vol. 5, pp. 490–501.
Baclawski, K., M. Kokar, P. Kogut, L. Hart, J. Smith, W. Holmes, J. Letkowski, and
M. Aronson. 2001. Extending UML to support ontology engineering for the Se-
mantic Web. In M. Gogolla and C. Kobryn (eds.),Fourth International Conference on
the Unified Modeling Language, vol. 2185, pp. 342–360. Berlin: Springer-Verlag.
Baclawski, K., C. Matheus, M. Kokar, and J. Letkowski. 2004. Toward a symptom on-
tology for Semantic Web applications. InISWC’04, vol. 3298, pp. 650–667. Springer-
Verlag, Berlin.
Bader, G.D., D. Betel, and C.W. Hogue. 2003. BIND: the biomolecular interaction
network database.Nucleic Acids Res.31:248–250.
Bairoch, A. 1991. PROSITE: a dictionary of sites and patterns in proteins. Nucleic
Acids Res.19:2241–2245.
Baker, P.G., A. Brass, S. Bechhofer, C. Goble, N. Paton, and R. Stevens. 1998. TAMBIS–
transparent access to multiple bioinformatics information sources. InProc. Int.
Conf. Intell. Syst. Mol. Biol., vol. 6, pp. 25–34.
Baker, P.G., C.A. Goble, S. Bechhofer, N.W. Paton, R. Stevens, and A. Brass. 1999. An
ontology for bioinformatics applications.Bioinformatics15:510–520.
Bateman, A., L. Coin, R. Durbin, R.D. Finn, V. Hollich, S. Griffiths-Jones, A. Khanna,
M. Marshall, S. Moxon, E.L. Sonnhammer, D.J. Studholme, C. Yeats, and S.R. Eddy.
- The Pfam protein families database.Nucleic Acids Res.32:D138–D141. Data-
base issue.
Benson, D.A., I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, and D.L. Wheeler. 2004.
GenBank: update.Nucleic Acids Res.32:D23–D26. Database issue.
Bergamaschi, S., S. Castano, and M. Vincini. 1999. Semantic integration of semistruc-
tured and structured data sources.SIGMOD Rec.28:54–59.
Bergman, C.M., B.D. Pfeiffer, D. Rincon-Limas, R.A. Hoskins, A. Gnirke, C.J. Mungall,
A.M. Wang, B. Kronmiller, J. Pacleb, S. Park, M. Stapleton, K. Wan, R.A. George,
P.J. de Jong, J. Botas, G.M. Rubin, and S.E. Celniker. 2002. Assessing the impact of
comparative genomic sequence data on the functional annotation of theDrosophila
genome.Genome Biol.3:RESEARCH0086.