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412 References


Wingender, E., P. Dietz, H. Karas, and R. Knuppel. 1996. TRANSFAC: A database on
transcription factors and their DNA binding sites.Nucleic Acids Res.24:238–241.
Wittgenstein, L. 1922.Tractatus Logico-Philosophicus. London: Routledge and Kegan
Paul. Translated by C. Ogden.
Wittgenstein, L. 1953.Philosophical Investigations. New York: Macmillan.
WonderWeb, 2004. WonderWeb OWL Ontology Validator.phoebus.cs.man.ac.
uk:9999/OWL/Validator.
Wroe, C.J., R. Stevens, C.A. Goble, and M. Ashburner. 2003. A methodology to mi-
grate the gene ontology to a description logic environment using DAML+OIL.Pac.
Symp. Biocomput.pp. 624–635.
XBN, 1999. XML Belief Network file format.research.microsoft.com/dtas/
bnformat/xbn_dtd.html.
Xerlin, 2003. Xerlin XML Modeling Application website.www.xerlin.org.
XML, 2004. Survey of XML editors.www.xml.com/pub/rg/XML_Editors.
XTM, 2000. The XTM website.topicmaps.org.
Yandell, M.D., and W.H. Majoros. 2002. Genomics and natural language processing.
Nat. Rev. Genet.3:601–610.
Zadeh, L. 1965. Fuzzy sets.Information and Control8:338–353.
Zadeh, L. 1981. Possibility theory and soft data analysis. In L. Cobb and R. Thrall
(eds.),Mathematical Frontier of the Social and Policy Sciences, pp. 69–129. Boulder, CO:
Westview.
Zadeh, L. 1984. A mathematical theory of evidence [book review]. Artif. Intell.5:
81–83.
Zanzoni, A., L. Montecchi-Palazzi, M. Quondam, G. Ausiello, M. Helmer-Citterich,
and G. Cesareni. 2002. MINT: a Molecular INTeraction database.FEBS Lett.513:
135–140.
Zeeberg, B.R., W. Feng, G. Wang, M.D. Wang, A.T. Fojo, M. Sunshine, S. Narasimhan,
D.W. Kane, W.C. Reinhold, S. Lababidi, K.J. Bussey, J. Riss, J.C. Barrett, and J.N.
Weinstein. 2003. GoMiner: a resource for biological interpretation of genomic and
proteomic data.Genome Biol.4:R28.
Zhang, B., D. Schmoyer, S. Kirov, and J. Snoddy. 2004. GOTree Machine (GOTM): a
web-based platform for interpreting sets of interesting genes using Gene Ontology
hierarchies.BMC Bioinformatics5:16.
Zhang, Z., A.A. Schaffer, W. Miller, T.L. Madden, D.J. Lipman, E.V. Koonin, and S.F.
Altschul. 1998. Protein sequence similarity searches using patterns as seeds.Nu-
cleic Acids Res.26:3986–3990.
Zhang, Z., S. Schwartz, L. Wagner, and W. Miller. 2000. A greedy algorithm for
aligning DNA sequences.J. Comput. Biol.7:203–214.
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