Synthetic Biology Parts, Devices and Applications

(Nandana) #1

158 7 Splicing and Alternative Splicing Impact on Gene Design


78 Kohtz, J.D., Jamison, S.F., Will, C.L., Zuo, P. et al. (1994) Protein–protein
interactions and 5′-splice-site recognition in mammalian mRNA precursors.
Nature, 368 , 119–124.
79 Roscigno, R.F. and Garcia-Blanco, M.A. (1995) SR proteins escort the U4/U6.U5
tri-snRNP to the spliceosome. RNA, 1 , 692–706.
80 Lareau, L.F., Inada, M., Green, R.E., Wengrod, J.C. et al. (2007) Unproductive
splicing of SR genes associated with highly conserved and ultraconserved DNA
elements. Nature, 446 , 926–929.
81 Ni, J.Z., Grate, L., Donohue, J.P., Preston, C. et al. (2007) Ultraconserved
elements are associated with homeostatic control of splicing regulators by
alternative splicing and nonsense-mediated decay. Genes Dev., 21 , 708–718.
82 Loomis, R.J., Naoe, Y., Parker, J.B., Savic, V. et al. (2009) Chromatin binding of
SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated
by histone H3 serine 10 phosphorylation. Mol. Cell, 33 , 450–461.
83 Das, R., Yu, J., Zhang, Z., Gygi, M.P. et al. (2007) SR proteins function in
coupling RNAP II transcription to pre-mRNA splicing. Mol. Cell, 26 ,
867–881.
84 Lin, S., Coutinho-Mansfield, G., Wang, D., Pandit, S. et al. (2008) The splicing
factor SC35 has an active role in transcriptional elongation. Nat. Struct. Mol.
Biol., 15 , 819–826.
85 Huang, Y. and Steitz, J.A. (2005) SRprises along a messenger’s journey. Mol. Cell,
17 , 613–615.
86 Zhou, Z. and Fu, X.D. (2013) Regulation of splicing by SR proteins and SR
protein-specific kinases. Chromosoma, 122 , 191–207.
87 Dreyfuss, G., Matunis, M.J., Pinol-Roma, S., and Burd, C.G. (1993) hnRNP
proteins and the biogenesis of mRNA. Annu. Rev. Biochem., 62 , 289–321.
88 Michelle, L., Barbier, J., and Chabot, B. (2012) hnRNP and hnRNP-like proteins
in splicing control: molecular mechanisms and implication in human diseases,
in RNA Binding Proteins (ed. Z.J. Lorkovic), Landes Biosciences, pp. 1–25.
89 Daubner, G.M., Clery, A., and Allain, F.H. (2013) RRM-RNA recognition:
NMR or crystallography...and new findings. Curr. Opin. Struct. Biol., 23 ,
100–108.
90 Krecic, A.M. and Swanson, M.S. (1999) hnRNP complexes: composition,
structure, and function. Curr. Opin. Cell Biol., 11 , 363–371.
91 Burd, C.G. and Dreyfuss, G. (1994) Conserved structures and diversity of
functions of RNA-binding proteins. Science, 265 , 615–621.
92 Kiledjian, M. and Dreyfuss, G. (1992) Primary structure and binding activity of
the hnRNP U protein: binding RNA through RGG box. EMBO J., 11 ,
2655–2664.
93 Pinol-Roma, S. and Dreyfuss, G. (1992) Shuttling of pre-mRNA binding proteins
between nucleus and cytoplasm. Nature, 355 , 730–732.
94 Jean-Philippe, J., Paz, S., and Caputi, M. (2013) hnRNP A1: the Swiss army knife
of gene expression. Int. J. Mol. Sci., 14 , 18999–19024.
95 Campillos, M., Lamas, J.R., Garcia, M.A., Bullido, M.J. et al. (2003) Specific
interaction of heterogeneous nuclear ribonucleoprotein A1 with the −219T
allelic form modulates APOE promoter activity. Nucleic Acids Res., 31 ,
3063–3070.
Free download pdf