Synthetic Biology Parts, Devices and Applications

(Nandana) #1
References 29

References


1 Bailey, J.E. (1991) Toward a science of metabolic engineering. Science, 252
(5013), 1668–1675.
2 Stephanopoulos, G. and Vallino, J.J. (1991) Network rigidity and metabolic
engineering in metabolite overproduction. Science, 252 (5013), 1675–1681.
3 Shendure, J. and Lieberman Aiden, E. (2012) The expanding scope of DNA
sequencing. Nat. Biotechnol., 30 (11), 1084–1094.
4 Oberhardt, M.A., Palsson, B.Ø., and Papin, J.A. (2009) Applications of genome-
scale metabolic reconstructions. Mol. Syst. Biol., 5 (1), 320.
5 Cleary, M.A., Kilian, K., Wang, Y. et al. (2004) Production of complex nucleic
acid libraries using highly parallel in situ oligonucleotide synthesis. Nat.
Methods, 1 (3), 241–248.
6 Yu, D., Ellis, H.M., Lee, E.-C. et al. (2000) An efficient recombination system for
chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 97
(11), 5978–5983.
7 Zhang, Y., Buchholz, F., Muyrers, J.P.P., and Stewart, A.F. (1998) A new logic for
DNA engineering using recombination in Escherichia coli. Nat. Genet., 20 (2),
123–128.
8 Shoemaker, D.D., Lashkari, D.A., Morris, D. et al. (1996) Quantitative
phenotypic analysis of yeast deletion mutants using a highly parallel molecular
bar–coding strategy. Nat. Genet., 14 (4), 450–456.
9 Murphy, K.C. (1998) Use of bacteriophage λ recombination functions to
promote gene replacement in Escherichia coli. J. Bacteriol., 180 (8), 2063–2071.
10 Datta, S., Costantino, N., Zhou, X., and Court, D.L. (2008) Identification and
analysis of recombineering functions from gram-negative and gram-positive
bacteria and their phages. Proc. Natl. Acad. Sci. U.S.A., 105 (5), 1626–1631.
11 Sharan, S.K., Thomason, L.C., Kuznetsov, S.G., and Court, D.L. (2009)
Recombineering: a homologous recombination-based method of genetic
engineering. Nat. Protoc., 4 (2), 206–223.
12 Murphy, K.C. (1991) Lambda Gam protein inhibits the helicase and chi-
stimulated recombination activities of Escherichia coli RecBCD enzyme.
J. Bacteriol., 173 (18), 5808–5821.
13 Cotta-de-Almeida, V., Schonhoff, S., Shibata, T. et al. (2003) A new method for
rapidly generating gene-targeting vectors by engineering BACs through
homologous recombination in bacteria. Genome Res., 13 (9), 2190–2194.
14 Datta, S., Costantino, N., and Court, D.L. (2006) A set of recombineering
plasmids for gram-negative bacteria. Gene, 379 , 109–115.
15 Pines, G., Freed, E.F., Winkler, J.D., and Gill, R.T. (2015) Bacterial
recombineering: genome engineering via phage-based homologous
recombination. ACS Synth. Biol., 4 (11), 1176–1185.
16 Mosberg, J.A., Lajoie, M.J., and Church, G.M. (2010) Lambda red
recombineering in Escherichia coli occurs through a fully single-stranded
intermediate. Genetics, 186 (3), 791–799.
17 Muniyappa, K. and Radding, C.M. (1986) The homologous recombination
system of phage lambda. Pairing activities of beta protein. J. Biol. Chem., 261
(16), 7472–7478.

Free download pdf