Computational Systems Biology Methods and Protocols.7z

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  1. Veltroni M, De Zen L, Sanzari MC, Maglia O,
    Dworzak MN, Ratei R, Biondi A, Basso G,
    Gaipa G, Group IB-A-F-M-S (2003) Expres-
    sion of CD58 in normal, regenerating and
    leukemic bone marrow B cells: implications
    for the detection of minimal residual disease
    in acute lymphocytic leukemia. Haematolo-
    gica 88(11):1245–1252

  2. Latger-Cannard V, Besson I, Doco-
    Lecompte T, Lecompte T (2004) A standar-
    dized procedure for quantitation of CD11b
    on polymorphonuclear neutrophil by flow
    cytometry: potential application in infectious
    diseases. Clin Lab Haematol 26(3):177–186.
    https://doi.org/10.1111/j.1365-2257.
    2004.00599.x

  3. Smith RA, Giorgio TD (2004) Quantitation
    and kinetics of CD51 surface receptor expres-
    sion: implications for targeted delivery. Ann
    Biomed Eng 32(5):635–644

  4. Olejniczak SH, Stewart CC, Donohue K,
    Czuczman MS (2006) A quantitative explora-
    tion of surface antigen expression in common
    B-cell malignancies using flow cytometry.
    Immunol Investig 35(1):93–114. https://
    doi.org/10.1080/08820130500496878

  5. Riquelme BD, de Isla NG, Valverde JR, Stoltz
    JF (2006) A simple method for quantifying
    high density antigens in erythrocyte mem-
    brane by flow cytometry. J Biochem Biophys
    Methods 68(1):31–42.https://doi.org/10.
    1016/j.jbbm.2005.12.009

  6. Calonego SB, Barjas-Castro Mde L, Metze K,
    Pereira FG, Lorand-Metze I (2008) The
    influence of storage and leukocyte depletion
    on the antigen densities of FY1, FY2, MNS3
    and MNS4 measured by flow cytometry.
    Transfus Apher Sci 38(2):101–107.https://
    doi.org/10.1016/j.transci.2007.11.001

  7. Tam CS, Otero-Palacios J, Abruzzo LV, Jor-
    gensen JL, Ferrajoli A, Wierda WG, Lerner S,
    O’Brien S, Keating MJ (2008) Chronic lym-
    phocytic leukaemia CD20 expression is
    dependent on the genetic subtype: a study of
    quantitative flow cytometry and fluorescent
    in-situ hybridization in 510 patients. Br J
    Haematol 141(1):36–40. https://doi.org/
    10.1111/j.1365-2141.2008.07012.x

  8. Panke C, Weininger D, Haas A, Schelter F,
    Schlothauer T, Bader S, Sircar R, Josel HP,
    Baer U, Burtscher H, Mundigl O, Grote M,
    Brinkmann U, Sustmann C (2013) Quantifi-
    cation of cell surface proteins with bispecific
    antibodies. Protein Eng Des Sel 26
    (10):645–654. https://doi.org/10.1093/
    protein/gzt035

  9. Challagundla P, Jorgensen JL, Kanagal-
    Shamanna R, Gurevich I, Pierson DM,


Ferrajoli A, Reyes SR, Medeiros LJ, Miranda
RN (2014) Utility of quantitative flow cyto-
metry immunophenotypic analysis of CD5
expression in small B-cell neoplasms. Arch
Pathol Lab Med 138(7):903–909.https://
doi.org/10.5858/arpa.2013-0367-OA


  1. Dragowska WH, Lopes de Menezes DE,
    Sartor J, Mayer LD (2000) Quantitative fluo-
    rescence cytometric analysis of Bcl-2 levels in
    tumor cells exhibiting a wide range of inher-
    ent Bcl-2 protein expression: correlation with
    Western blot analysis. Cytometry 40
    (4):346–352

  2. Maher KJ, Klimas NG, Hurwitz B, Schiff R,
    Fletcher MA (2002) Quantitative fluores-
    cence measures for determination of intracel-
    lular perforin content. Clin Diagn Lab
    Immunol 9(6):1248–1252.https://doi.org/
    10.1128/cdli.9.6.1248-1252.2002

  3. Kay S, Herishanu Y, Pick M, Rogowski O,
    Baron S, Naparstek E, Polliack A, Deutsch
    VR (2006) Quantitative flow cytometry of
    ZAP-70 levels in chronic lymphocytic leuke-
    mia using molecules of equivalent soluble
    fluorochrome. Cytometry B Clin Cytom 70
    (4):218–226. https://doi.org/10.1002/
    cyto.b.20078

  4. Ornatsky O, Bandura D, Baranov V, Nitz M,
    Winnik MA, Tanner S (2010) Highly multi-
    parametric analysis by mass cytometry. J
    Immunol Methods 361(1–2):1–20.https://
    doi.org/10.1016/j.jim.2010.07.002

  5. Wang L, Abbasi F, Ornatsky O, Cole KD,
    Misakian M, Gaigalas AK, He HJ, Marti GE,
    Tanner S, Stebbings R (2012) Human CD4+
    lymphocytes for antigen quantification: char-
    acterization using conventional flow cytome-
    try and mass cytometry. Cytometry A 81
    (7):567–575. https://doi.org/10.1002/
    cyto.a.22060

  6. Han Q, Bradshaw EM, Nilsson B, Hafler DA,
    Love JC (2010) Multidimensional analysis of
    the frequencies and rates of cytokine secretion
    from single cells by quantitative microengrav-
    ing. Lab Chip 10(11):1391–1400.https://
    doi.org/10.1039/b926849a

  7. Adalsteinsson VA, Tahirova N,
    Tallapragada N, Yao X, Campion L,
    Angelini A, Douce TB, Huang C,
    Bowman B, Williamson CA, Kwon DS,
    Wittrup KD, Love JC (2013) Single cells
    from human primary colorectal tumors
    exhibit polyfunctional heterogeneity in secre-
    tions of ELR+ CXC chemokines. Integr Biol 5
    (10):1272–1281.https://doi.org/10.1039/
    c3ib40059j

  8. De Rosa SC, Herzenberg LA, Herzenberg
    LA, Roederer M (2001) 11-color,


304 Beiyuan Fan et al.

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