Computational Systems Biology Methods and Protocols.7z

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Table 1(continued)Tool

Description

Requirements

Type

Interface

Operatingsystem

Programinglanguages References

Batch effect removalBatch effect

removal

Batch effect removal is a method

based on a residual neuralnetwork, trained to minimizethe maximum meandiscrepancy (MMD) betweenthe multivariate distributionsof two replicates, measured indifferent batches

NA

Package

Command

line

Unix/

Linux

Python, R [

115

]

350 Yungang Xu and Xiaobo Zhou

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