- J. Fischer, R. Teimer, S. Amlacher, R. Kunze, E. Hurt,
Linker Nups connect the nuclear pore complex inner ring
with the outer ring and transport channel.Nat. Struct. Mol.
Biol. 22 , 774–781 (2015). doi:10.1038/nsmb.3084;
pmid: 26344569 - J. Kosinskiet al., Molecular architecture of the inner
ring scaffold of the human nuclear pore complex.Science
352 , 363–365 (2016). doi:10.1126/science.aaf0643;
pmid: 27081072 - D. H. Linet al., Architecture of the symmetric core of the
nuclear pore.Science 352 , aaf1015 (2016). doi:10.1126/
science.aaf1015; pmid: 27081075 - M. Allegrettiet al., In-cell architecture of the nuclear pore and
snapshots of its turnover.Nature 586 , 796–800 (2020).
doi:10.1038/s41586-020-2670-5; pmid: 32879490 - S. J. Kimet al., Integrative structure and functional anatomy of
a nuclear pore complex.Nature 555 , 475–482 (2018).
doi:10.1038/nature26003; pmid: 29539637 - A. von Appenet al., In situ structural analysis of the human
nuclear pore complex.Nature 526 ,140–143 (2015).
doi:10.1038/nature15381; pmid: 26416747 - S. A. Nordeen, D. L. Turman, T. U. Schwartz, Yeast Nup84-
Nup133 complex structure details flexibility and reveals
conservation of the membrane anchoring ALPS motif.
Nat. Commun. 11 , 6060 (2020). doi:10.1038/s41467-020-
19885-5; pmid: 33247142 - S. Amlacheret al., Insight into structure and assembly of the
nuclear pore complex by utilizing the genome of a eukaryotic
thermophile.Cell 146 , 277–289 (2011). doi:10.1016/
j.cell.2011.06.039; pmid: 21784248 - T. Stuwe, D. H. Lin, L. N. Collins, E. Hurt, A. Hoelz, Evidence for
an evolutionary relationship between the large adaptor
nucleoporin Nup192 and karyopherins.Proc. Natl. Acad.
Sci. U.S.A. 111 , 2530–2535 (2014). doi:10.1073/
pnas.1311081111; pmid: 24505056 - H. Chug, S. Trakhanov, B. B. Hülsmann, T. Pleiner, D. Görlich,
Crystal structure of the metazoan Nup62•Nup58•Nup54
nucleoporin complex.Science 350 , 106–110 (2015).
doi:10.1126/science.aac7420; pmid: 26292704 - S. Mosalagantiet al., In situ architecture of the algal nuclear
pore complex.Nat. Commun. 9 , 2361 (2018). doi:10.1038/
s41467-018-04739-y; pmid: 29915221 - A. P. Schulleret al., The cellular environment shapes the
nuclear pore complex architecture.Nature 598 , 667– 671
(2021). doi:10.1038/s41586-021-03985-3; pmid: 34646014 - V. Zilaet al., Cone-shaped HIV-1 capsids are transported
through intact nuclear pores.Cell 184 , 1032–1046.e18 (2021).
doi:10.1016/j.cell.2021.01.025; pmid: 33571428 - C. E. Zimmerliet al., Nuclear pores dilate and constrict in
cellulo.Science 374 , eabd9776 (2021). doi:10.1126/science.
abd9776; pmid: 34762489 - S. Mosalagantiet al., AI-based structure prediction empowers
integrative structural analysis of human nuclear pores.Science
376 , eabm9506 (2022). doi:10.1126/science.abm9506 - P. Sampathkumaret al., Structure, dynamics, evolution, and
function of a major scaffold component in the nuclear pore
complex.Structure 21 , 560–571 (2013). doi:10.1016/
j.str.2013.02.005; pmid: 23499021 - K. R. Andersenet al., Scaffold nucleoporins Nup188 and
Nup192 share structural and functional properties with nuclear
transport receptors.eLife 2 , e00745 (2013). doi:10.7554/
eLife.00745; pmid: 23795296 - S. M. Baileret al., Nup116p and nup100p are interchangeable
through a conserved motif which constitutes a docking site for
the mRNA transport factor gle2p.EMBO J. 17 , 1107– 1119
(1998). doi:10.1093/emboj/17.4.1107; pmid: 9463388 - K. J. Ryan, S. R. Wente, Isolation and characterization of new
Saccharomyces cerevisiae mutants perturbed in nuclear pore
complex assembly.BMC Genet. 3 , 17 (2002). doi:10.1186/
1471-2156-3-17; pmid: 12215173 - S. S. Patel, B. J. Belmont, J. M. Sante, M. F. Rexach, Natively
unfolded nucleoporins gate protein diffusion across the nuclear
pore complex.Cell 129 ,83–96 (2007). doi:10.1016/
j.cell.2007.01.044; pmid: 17418788 - K. Yoshida, H. S. Seo, E. W. Debler, G. Blobel, A. Hoelz,
Structural and functional analysis of an essential nucleoporin
heterotrimer on the cytoplasmic face of the nuclear pore
complex.Proc. Natl. Acad. Sci. U.S.A. 108 , 16571–16576 (2011).
doi:10.1073/pnas.1112846108; pmid: 21930948 - A. de Bruyn Kops, C. Guthrie, Identification of the novel
Nup188-brr7allele in a screen for cold-sensitive mRNA export
mutants inSaccharomyces cerevisiae. G3 8 , 2991– 3003
(2018). doi:10.1534/g3.118.200447; pmid: 30021831
55. M. Miao, K. J. Ryan, S. R. Wente, The integral membrane
protein Pom34p functionally links nucleoporin subcomplexes.
Genetics 172 , 1441–1457 (2006). doi:10.1534/
genetics.105.052068; pmid: 16361228
56. U. Nehrbass, M. P. Rout, S. Maguire, G. Blobel, R. W. Wozniak,
The yeast nucleoporin Nup188p interacts genetically and
physically with the core structures of the nuclear pore
complex.J. Cell Biol. 133 , 1153–1162 (1996). doi:10.1083/
jcb.133.6.1153; pmid: 8682855
57. M. Marelli, J. D. Aitchison, R. W. Wozniak, Specific binding of
the karyopherin Kap121p to a subunit of the nuclear pore
complex containing Nup53p, Nup59p, and Nup170p.J. Cell
Biol. 143 , 1813–1830 (1998). doi:10.1083/jcb.143.7.1813;
pmid: 9864357
58. N. Schraderet al., Structural basis of the nic96 subcomplex
organization in the nuclear pore channel.Mol. Cell 29 ,46– 55
(2008). doi:10.1016/j.molcel.2007.10.022; pmid: 18206968
59. S. Jeudy, T. U. Schwartz, Crystal structure of nucleoporin
Nic96 reveals a novel, intricate helical domain architecture.
J. Biol. Chem. 282 , 34904–34912 (2007). doi:10.1074/
jbc.M705479200; pmid: 17897938
60. C. J. Bleyet al., Architecture of the cytoplasmic face of the
nuclear pore.Science 376 , eabm9129 (2022). doi:10.1126/
science.abm9129
61. D. H. Linet al., Structural and functional analysis of mRNA
export regulation by the nuclear pore complex.Nat. Commun.
9 , 2319 (2018). doi:10.1038/s41467-018-04459-3;
pmid: 29899397
62. G. Drinet al., A general amphipathic alpha-helical motif for
sensing membrane curvature.Nat. Struct. Mol. Biol. 14 ,
138 – 146 (2007). doi:10.1038/nsmb1194; pmid: 17220896
63. N. Eisenhardt, J. Redolfi, W. Antonin, Interaction of Nup53 with
Ndc1 and Nup155 is required for nuclear pore complex
assembly.J. Cell Sci. 127 , 908–921 (2014). pmid: 24363447
64. E. Onischenko, L. H. Stanton, A. S. Madrid, T. Kieselbach,
K. Weis, Role of the Ndc1 interaction network in yeast nuclear
pore complex assembly and maintenance.J. Cell Biol. 185 ,
475 – 491 (2009). doi:10.1083/jcb.200810030
pmid: 19414609
65. A. Oriet al., Cell type-specific nuclear pores: A case in point
for context-dependent stoichiometry of molecular machines.
Mol. Syst. Biol. 9 , 648 (2013). doi:10.1038/msb.2013.4;
pmid: 23511206
66. E. R. Griffis, N. Altan, J. Lippincott-Schwartz, M. A. Powers,
Nup98 is a mobile nucleoporin with transcription-dependent
dynamics.Mol. Biol. Cell 13 , 1282–1297 (2002). doi:10.1091/
mbc.01-11-0538; pmid: 11950939
67. G. Rabut, V. Doye, J. Ellenberg, Mapping the dynamic
organization of the nuclear pore complex inside single living
cells.Nat. Cell Biol. 6 , 1114–1121 (2004). doi:10.1038/ncb1184;
pmid: 15502822
68. N. P. Allen, L. Huang, A. Burlingame, M. Rexach, Proteomic
analysis of nucleoporin interacting proteins.J. Biol. Chem.
276 , 29268–29274 (2001). doi:10.1074/jbc.M102629200;
pmid: 11387327
69. E. Onischenkoet al., Natively unfolded FG repeats stabilize the
structure of the nuclear pore complex.Cell 171 , 904–917.e19
(2017). doi:10.1016/j.cell.2017.09.033; pmid: 29033133
70. A. Levchenko, Allovalency: A case of molecular entanglement.
Curr. Biol. 13 , R876–R878 (2003). doi:10.1016/
j.cub.2003.10.049; pmid: 14614843
71. J. G. Olsen, K. Teilum, B. B. Kragelund, Behaviour of intrinsically
disordered proteins in protein-protein complexes with an emphasis
on fuzziness.Cell. Mol. Life Sci. 74 ,3175–3183 (2017).
doi:10.1007/s00018-017-2560-7;pmid: 28597296
72. E. Laurellet al., Phosphorylation of Nup98 by multiple kinases
is crucial for NPC disassembly during mitotic entry.Cell 144 ,
539 – 550 (2011). doi:10.1016/j.cell.2011.01.012;pmid: 21335236
73. M. I. Linderet al., Mitotic disassembly of nuclear pore
complexes involves CDK1- and PLK1-mediated phosphorylation
of key interconnecting nucleoporins.Dev. Cell 43 ,141–156.e7
(2017). doi:10.1016/j.devcel.2017.08.020; pmid: 29065306
74. S. M. Gough, C. I. Slape, P. D. Aplan, NUP98 gene fusions and
hematopoietic malignancies: Common themes and new
biologic insights.Blood 118 , 6247–6257 (2011). doi:10.1182/
blood-2011-07-328880; pmid: 21948299
75. S. G. Regmiet al., The nuclear pore complex consists of two
independent scaffolds. bioRxiv 2020.11.13.381947 [Preprint]
(2020);https://doi.org/10.1101/2020.11.13.381947.
76. D. A. Braunet al., Mutations in nuclear pore genesNUP93,
NUP205andXPO5cause steroid-resistant nephrotic
syndrome.Nat. Genet. 48 , 457–465 (2016). doi:10.1038/
ng.3512; pmid: 26878725
77. A. M. Muiret al., Bi-allelic loss-of-function variants inNUP188cause
a recognizable syndrome characterized by neurologic, ocular, and
cardiac abnormalities.Am.J.Hum.Genet. 106 ,623–631 (2020).
doi:10.1016/j.ajhg.2020.03.009;pmid: 32275884
78. R. Ungricht, M. Klann, P. Horvath, U. Kutay, Diffusion and
retention are major determinants of protein targeting to the
inner nuclear membrane.J. Cell Biol. 209 , 687–704 (2015).
doi:10.1083/jcb.201409127; pmid: 26056139
79. T. Ohba, E. C. Schirmer, T. Nishimoto, L. Gerace, Energy- and
temperature-dependent transport of integral proteins to the
inner nuclear membrane via the nuclear pore.J. Cell Biol. 167 ,
1051 – 1062 (2004). doi:10.1083/jcb.200409149;
pmid: 15611332
80. N. Zulegeret al., System analysis shows distinct mechanisms
and common principles of nuclear envelope protein dynamics.
J. Cell Biol. 193 ,109–123 (2011). doi:10.1083/jcb.201009068;
pmid: 21444689
81. M. C. King, C. P. Lusk, G. Blobel, Karyopherin-mediated import of
integral inner nuclear membrane proteins.Nature 442 , 1003– 1007
(2006). doi:10.1038/nature05075;pmid: 16929305
82. A. C. Meinemaet al., Long unfolded linkers facilitate membrane
protein import through the nuclear pore complex.Science 333 ,
90 – 93 (2011). doi:10.1126/science.1205741;pmid: 21659568
83. R. K. Lokareddyet al., Distinctive properties of the nuclear
localization signals of inner nuclear membrane proteins Heh1
and Heh2.Structure 23 , 1305–1316 (2015). doi:10.1016/
j.str.2015.04.017; pmid: 26051712
84. P. Popken, A. Ghavami, P. R. Onck, B. Poolman, L. M. Veenhoff,
Size-dependent leak of soluble and membrane proteins through
the yeast nuclear pore complex.Mol. Biol. Cell 26 , 1386– 1394
(2015). doi:10.1091/mbc.E14-07-1175;pmid: 25631821
85. A. Kraltet al., Conservation of inner nuclear membrane
targeting sequences in mammalian Pom121 and yeast Heh2
membrane proteins.Mol. Biol. Cell 26 , 3301–3312 (2015).
doi:10.1091/mbc.e15-03-0184; pmid: 26179916
86. Y. Zhanget al., Molecular architecture of the luminal ring of the
Xenopus laevisnuclear pore complex.Cell Res. 30 , 532– 540
(2020). doi:10.1038/s41422-020-0320-y;pmid: 32367042
87. A. Elosegui-Artolaet al., Force triggers YAP nuclear entry by
regulating transport across nuclear pores.Cell 171 , 1397–1410.
e14 (2017). doi:10.1016/j.cell.2017.10.008; pmid: 29107331
88. S. Frey, D. Görlich, A saturated FG-repeat hydrogel can
reproduce the permeability properties of nuclear pore
complexes.Cell 130 , 512–523 (2007). doi:10.1016/
j.cell.2007.06.024; pmid: 17693259
89. S. Petrovicet al., Architecture of the linker-scaffold
in the nuclear pore, Version 1.0. CaltechDATA (2021);
https://doi.org/10.22002/D1.2208.
ACKNOWLEDGMENTS
We thank A. Patke for critical reading and editing of the manuscript
and insightful discussions; M. Beck for sharing an ~12-Å cryo-ET
reconstruction of the intact human HeLa cell NPC before
publication [Electron Microscopy Data Bank (EMDB) ID EMD-
14322]; E. Hurt, S. Wente, B. Fountura, D. Baltimore, and the
Kazusa DNA Research Institute for providing material; and F. Liang,
A. Lyons, A. Tang, and J. Thai for experimental support. We are
grateful to D. Borek, J. Kollman, G. Lander, D. Lin, S. Saladi,
and members of the Hoelz lab for insightful discussion and expertise.
We acknowledge J. Kaiser, the scientific staff of the Stanford
Synchrotron Radiation Lightsource (SSRL) beamline 12-2, and the
National Institute of General Medical Sciences and National Cancer
Institute Structural Biology Facility (GM/CA) at the Advanced
Photon Source (APS) for their support with x-ray diffraction
measurements; S. Chen and A. Malyutin of the Beckman Institute
Resource Center for Transmission Electron Microscopy at the
California Institute of Technology (Caltech) for support with
cryo-EM microscopy imaging; J. Myers and the scientific staff of
the Pacific Northwest CryoEM Center (PNCC) at the Oregon Health
and Science University (OHSU) and the Environmental Molecular
Sciences Laboratory (EMSL) for their support with cryo-EM
imaging; and the Cold Spring Harbor Laboratory (CSHL) cryo-EM
course, the CSHL X-ray Methods in Structural Biology course, and
the Michigan Life Science Institute cryo-EM workshop and their
instructors M. Cianfrocco, W. Furey, G. Gilliland, J. Kollman,
G. Lander, M. Ohi, J. Pflugrath, A. McPherson, and M. Vos, along
with all the course staff and lecturers for valuable expert training.
Funding:The Molecular Observatory at Caltech is supported
by D. and J. Voet, the Gordon and Betty Moore Foundation, and the
Beckman Institute. The Center for Molecular Medicine at Caltech
is supported by the Gordon and Betty Moore Foundation. The
operations at the SSRL and APS are supported by the US
Department of Energy (DOE) and the National Institutes of Health
Petrovicet al., Science 376 , eabm9798 (2022) 10 June 2022 17 of 18
RESEARCH | STRUCTURE OF THE NUCLEAR PORE