6nature research | reporting summary
October 2018ChIPseq_KD_Boris
Raw files:
shB4_Res_Kelly_BORIS_1.fastq.gz
shB4_Res_Kelly_BORIS_2.fastq.gz
shB4_Res_Kelly_CTCF_1.fastq.gz
shB4_Res_Kelly_CTCF_2.fastq.gz
shB4_Res_Kelly_H3K27ac_1.fastq.gz
shB4_Res_Kelly_H3K27ac_2.fastq.gz
shB4_Res_Kelly_INPUT_1.fastq.gz
shB4_Res_Kelly_INPUT_2.fastq.gz
shB4_Res_Kelly_INPUT_BORIS_1.fastq.gz
shB4_Res_Kelly_INPUT_BORIS_2.fastq.gz
shB4_Res_Kelly_SMC1_1.fastq.gz
shB4_Res_Kelly_SMC1_2.fastq.gz
shLUC_Res_Kelly_BORIS_1.fastq.gz
shLUC_Res_Kelly_BORIS_2.fastq.gz
shLUC_Res_Kelly_CTCF_1.fastq.gz
shLUC_Res_Kelly_CTCF_2.fastq.gz
shLUC_Res_Kelly_H3K27ac_1.fastq.gz
shLUC_Res_Kelly_H3K27ac_2.fastq.gz
shLUC_Res_Kelly_INPUT_1.fastq.gz
shLUC_Res_Kelly_INPUT_2.fastq.gz
shLUC_Res_Kelly_SMC1_1.fastq.gz
shLUC_Res_Kelly_SMC1_2.fastq.gz
Processed files:
shB4_Res_Kelly_BORIS.noNeg.sorted.bw
shB4_Res_Kelly_CTCF.noNeg.sorted.bw
shB4_Res_Kelly_H3K27ac.noNeg.sorted.bw
shB4_Res_Kelly_SMC1.noNeg.sorted.bw
shLUC_Res_Kelly_BORIS.noNeg.sorted.bw
shLUC_Res_Kelly_CTCF.noNeg.sorted.bw
shLUC_Res_Kelly_H3K27ac.noNeg.sorted.bw
shLUC_Res_Kelly_SMC1.noNeg.sorted.bw
shB4_Res_Kelly_BORIS_vs_shB4_Res_Kelly_INPUT_peaks.narrowPeak
shB4_Res_Kelly_CTCF_vs_shB4_Res_Kelly_INPUT_peaks.narrowPeak
shB4_Res_Kelly_H3K27ac_vs_shB4_Res_Kelly_INPUT_peaks.broadPeak
shB4_Res_Kelly_SMC1_vs_shB4_Res_Kelly_INPUT_peaks.narrowPeak
shLUC_Res_Kelly_BORIS_vs_shLUC_Res_Kelly_INPUT_peaks.narrowPeak
shLUC_Res_Kelly_CTCF_vs_shLUC_Res_Kelly_INPUT_peaks.narrowPeak
shLUC_Res_Kelly_H3K27ac_vs_shLUC_Res_Kelly_INPUT_peaks.broadPeak
shLUC_Res_Kelly_SMC1_vs_shLUC_Res_Kelly_INPUT_peaks.narrowPeak
ChIPseq_Ewing_Sarcoma
Raw files:
TC32_BORIS_1.fastq.gz
TC32_BORIS_2.fastq.gz
TC32_H3K27ac_1.fastq.gz
TC32_H3K27ac_2.fastq.gz
TC32_input_1.fastq.gz
TC32_input_2.fastq.gz
TC32_SMC1_1.fastq.gz
TC32_SMC1_2.fastq.gz
TC71_BORIS_1.fastq.gz
TC71_BORIS_2.fastq.gz
TC71_H3K27ac_1.fastq.gz
TC71_H3K27ac_2.fastq.gz
TC71_input_1.fastq.gz
TC71_input_2.fastq.gz
TC71_SMC1_1.fastq.gz
TC71_SMC1_2.fastq.gz
Processed files:
Ewings_TC32_BORIS.noNeg.sorted.bw
Ewings_TC32_H3K27ac.noNeg.sorted.bw
Ewings_TC32_SMC1.noNeg.sorted.bw
Ewings_TC71_BORIS.noNeg.sorted.bw
Ewings_TC71_H3K27ac.noNeg.sorted.bw
Ewings_TC71_SMC1.noNeg.sorted.bw
Ewings_TC32_BORIS_vs_David_Ewings_TC32_INPUT_peaks.narrowPeak
Ewings_TC32_H3K27ac_vs_David_Ewings_TC32_INPUT_peaks.broadPeak
Ewings_TC32_SMC1_vs_David_Ewings_TC32_INPUT_peaks.narrowPeak
Ewings_TC71_BORIS_vs_David_Ewings_TC71_INPUT_peaks.narrowPeak
Ewings_TC71_H3K27ac_vs_David_Ewings_TC71_INPUT_peaks.broadPeak
Ewings_TC71_SMC1_vs_David_Ewings_TC71_INPUTpeaks.narrowPeak
Microarray Original_Submission_sens_res_res-JQ1
Raw files:
DD_1_PrimeView_par_Kelly_DMSO.CEL