Methods in Molecular Biology • 16 Enzymes of Molecular Biology

(Nancy Kaufman) #1
210 Hornby


  1. Notes

  2. Methylated DNA does not transform as efficiently as unmodified DNA
    into a number of common strains of E. coli. In general, strain C600 is
    suitable for Me-CG-modified DNA, RR1 for Me-CC modification, and
    K803 can tolerate both. This problem arises owing to the action of the
    mcrA mcrB genes of E. coli, which lead to restriction of cytosine-modified
    DNA. A detailed account of this problem has been given by Raleigh (2).

  3. 5-d-Azacytidine, when incorporated into DNA, is a potent inhibitor of
    the Mtase reaction. It !s thought that the analog traps the covalent enzyme-
    SH:pyridine intermediate, since methyltransfer to the 5-N position is
    mechanistically improbable (6).The peptide methinin is another potent
    inhibitor of mammalian DNA Mtase activity. However, its mode of
    action is obscure.
    Acknowledgments
    I would like to thank all of the members of my laboratory for their
    helpful comments on the manuscript.


Abbreviations
Mtase, methyltransferase; SAM, S-adenosylmethionine; dA,
deoxyadenine; dC, deoxycytidine; N, any deoxynucleotide; p, phosphate;
Me, methyl; SAH, S-adenosylhomocysteine; dam-, DNA adenine methy-
lation; ATP, adenosine triphosphate; HPLC, High-performance liquid chro-
matography; Py, pyrimidine; Pu, purine.


References


  1. Razin, A. and Riggs, A.D. (1980) DNA methylation and gene function. Science
    210, 604-610.

  2. Raleigh, E. A. (1987) Restriction and modification in vivo by Escherichia coli
    K12. Methods Enzymol. 152, 130-141.

  3. Woodcock, D. M., Crowther, P. J., and Diver, W. P. ('1987) The majority of
    deoxycytidines in human DNA are not in the CpG dinucleotide. Biochem.
    Biophys. Res. Comm. 145, 888-894.

  4. Gruenbaum,Y., Naveh-many, T., Cedar, H., and Razin, A. (1982) Sequence
    specificity of methylations in higher plants. Nature 292, 860-862.

  5. Cedar, H. (1988) DNA methylation and gene activity. Cell 53, 3,4.

  6. Santi, D. V., Garrett, C. E., and Barr, P. J. (1983) On the mechanism of inhibi-
    tion of DNA-cytosine methyltransferases by cytosine analogs. Cell 33, 9,10.

  7. Bestor, T. H., Laudano, A., Mattaliano, R., and Ingram, V. (1988) Cloning and
    sequencing of a cDNA encoding DNA methyltransferase of mouse cells. J.
    Mol. Biol. 202, 971-984.

Free download pdf