Methods in Molecular Biology • 16 Enzymes of Molecular Biology

(Nancy Kaufman) #1

Peptide Production 289



  1. Z Endoproteinase Lys-C (EC 3.4.99.30)
    2. 7.1. General Information
    This enzyme is a serine protease isolated from culture filtrates of
    Lysobacter enzymogenes (57).

  2. 7.2. Specificity
    The enzyme cleaves specifically C-terminal to lysine residues (57).
    Some minor nonspecific cleavages, notably at Asn--X bonds, have
    also been reported.

  3. 7.3. Molecular Mass
    It has a mol mass of about 33,000 Da.

  4. 7.4. pH Optimum
    The enzyme has a pH optimum in the range 8.5-8.8.

  5. 7.5. Assay
    The assay is based on hydrolysis of Tosyl-Gly-Pro-Lys-4-nitroanilide
    (commercially sold as Chromozym ® PL). Chromozym ® PL (9 mg) is
    dissolved in 1 mL of redistilled water. This solution (0.05 mL) is
    combined with 1.0 mL of buffer (25 mM Tris-HC1, pH 7.7, 1 mM
    EDTA) and incubated at 25°C. The reaction is started by addition of
    0.05 mL of enzyme (suitably diluted with the above buffer). The increase
    in absorbance is monitored at 405 nm, and using an extinction coeffi-
    cient of 10.4 mM-locm -1, the enzyme activity of the sample is calcu-
    lated. Using this assay, the enzyme is supplied with a specific activity
    of 25-35 U/mg, where 1 U is defined as the amount of enzyme that
    liberates 1 lxrnol 4-nitroaniline/min at 25°C from Tosyl-Gly-Pro-Lys-
    4-nitroanilide.

  6. 7.6. Stability
    The enzyme is active in 0.5% SDS, 5M urea, and in 10% acetonitrile.
    Aqueous solutions are stable at pH 5-12 for up to 1 d at 4°C, or can be
    stored at -20°C for months. The enzyme is stable at 4°C, stored dry. To
    avoid autolysis, the incubation temperature should not exceed 37°C (44).





      1. Inhibitors
        The enzyme is inhibited by DFP (1 mM), TLCK (1 rnM), leupeptin
        (0.4 mM), and aprotinin (100 gg/mL). The enzyme is not inhibited by
        EDTA (2 mM), PMSF (1 mM), or oq-antitrypsin.





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