217MedellinRA,EquihuaM,AminM(2000)Batdiversityandabundanceasindicatorsofdistur-
banceinneotropicalrainforests.ConservBiol14:1666–1675
MorlonH,SchwilkDW,BryantJAetal(2011)Spatialpatternsofphylogeneticdiversity.EcolLett
14:141–149
MortonSR,BrownJH,KeltDA,ReidJRW(1994)Comparisonsofcommunitystructureamong
smallmammalsofNorthAmericanandAustraliandeserts.AustJZool42:501–525
NipperessDA,MatsenFAIV(2013)Themeanandvarianceofphylogeneticdiversityunderrar-
efaction.MethodsEcolEvol4:566–572
NipperessDA,FaithDP,BartonK(2010)Resemblanceinphylogeneticdiversityamongecologi-
calassemblages.JVegSci21:809–820
O’DwyerJP,KembelSW,GreenJL(2012)Phylogeneticdiversitytheoryshedslightonthestruc-
tureofmicrobialcommunities.PLoSComputBiol8:e1002832
OlsonD,DinersteinE,WikramanayakeEetal(2001)Terrestrialecoregionsoftheworld:anew
mapoflifeonEarth.Bioscience51:933–938
OlszewskiTD(2004)Aunifiedmathematicalframeworkforthemeasurementofrichnessand
evennesswithinandamongmultiplecommunities.Oikos104:377–387
ParadisE,ClaudeJ,StrimmerK(2004)APE:analysesofphylogeneticsandevolutioninRlan-
guage.Bioinformatics20:289–290
PardiF,GoldmanN(2007)Resource-awaretaxonselectionformaximizingphylogeneticdiver-
sity.SystBiol56:431–444
PetcheyOL,GastonKJ(2002)Functionaldiversity(FD),speciesrichnessandcommunitycompo-
sition.EcolLett5:402–411
ProchesS,WilsonJ,CowlingR(2006)Howmuchevolutionaryhistoryina 10 x 10 plot?ProcR
SocB273:1143–1148
RCoreTeam(2012)R:Alanguageandenvironmentforstatisticalcomputing.RFoundationfor
StatisticalComputing,Vienna,Austria.URLhttp://www.R-project.org/
RaoCR(1982)Diversityanddissimilaritycoefficients:aunifiedapproach.TheorPopulBiol
21:24–43
RodriguesASL,GastonKJ(2002)Maximisingphylogeneticdiversityintheselectionofnetworks
ofconservationareas.BiolConserv105:103–111
RosauerDF,MooersAO(2013)Nurturingtheuseofevolutionarydiversityinnatureconservation.
TrendsEcolEvol28:322–323
RosauerD,LaffanSW,CrispMDetal(2009)Phylogeneticendemism:anewapproachforiden-
tifyinggeographicalconcentrationsofevolutionaryhistory.MolEcol18:4061–4072
RosindellJ,HubbellSP,EtienneRS(2011)Theunifiedneutraltheoryofbiodiversityandbioge-
ographyatageten.TrendsEcolEvol26:340–348
SandersHL(1968)Marinebenthicdiversity:acomparativestudy.AmNat102:243–282
SimberloffD(1972)Propertiesoftherarefactiondiversitymeasurement.AmNat106:414–418
SwensonNG(2009)Phylogeneticresolutionandquantifyingthephylogeneticdiversityanddis-
persionofcommunities.PLoSOne4:e4390
TidemannCR,WoodsideDP(1978)Acollapsiblebat-trapandacomparisonofresultsobtained
withthetrapandwithmist-nets.WildlRes5:355–362
TurnbaughPJ,HamadyM,YatsunenkoTetal(2009)Acoregutmicrobiomeinobeseandlean
twins.Nature457:480–484
UglandK,GrayJS,EllingsenKE(2003)Thespecies-accumulationcurveandestimationofspe-
ciesrichness.JAnimEcol72:888–897
WebbCO(2000)Exploringthephylogeneticstructureofecologicalcommunities:anexamplefor
rainforesttrees.AmNat156:145–155
Webb CO, Pitman N (2002)Phylogenetic balance and ecological evenness. Syst Biol
51:898–907
WebbCO,AckerlyDD,McPeekM,DonoghueMJ(2002)Phylogeniesandcommunityecology.
AnnRevEcolSyst33:475–505
YuDW,JiY,EmersonBC,WangX(2012)Biodiversitysoup:metabarcodingofarthropodsfor
rapidbiodiversityassessmentandbiomonitoring.MethodsEcolEvol3:613–623
The Rarefaction of Phylogenetic Diversity: Formulation, Extension and Application