12 2 5 Ecology of Microorganisms in Freshwater
fungi, protozoa, and algae and release materials which
contribute to the dissolved organic matter. The micro-
bial loop is that aspect of the food chain which depends
on the activities and contribution of microorganisms.
References
Foster, S. S. D., & Chilton, P. J. (2003). Groundwater: The
processes and global significance of aquifer degradation.
Philosophical Transactions of the Royal Society of London,
B, 358, 1957–1972.
Hahn, M. W. (2006). The microbial diversity of inland waters.
Current Opinion in Biotechnology, 17, 256–261.
Hugenholtz, P., Goebel, B. M., & Pace, N. R. (1998). Minireview:
Impact of culture-independent studies on the emerging phylo-
genetic diversity. Journal of Bacteriology, 180, 4765–4774.
Jones, S. E., Newton, R. J., & McMahon, K. D. (2008).
Potential for atmospheric deposition of bacteria to
influence bacterioplankton communities. FEMS Microbial
Ecology, 64, 384–394.
Lindstrom, E. S., Agterveld, M. P. K., & Zwart, G. (2005).
Distribution of typical freshwater bacterial groups is associated
with pH, temperature, and lake water retention time. Applied
and Environmental Microbiology, 71, 8201–8206.
Miskin, I. P., Farrimond, P., & Head, I. M. (1999). Identification of
novel bacterial lineages as active members of microbial popu-
lations in a freshwater sediment using a rapid RNA extraction
procedure and RT-PCR. Microbiology, 145, 1977–1987.
Oren, A. (2004). Prokaryote diversity and taxonomy: Current
status and future challenges. Philosophical Transactions of
the Royal Society of London, B, 359, 623–638.
Rappe, M. S., Vergin, K., & Giovannoni, S. J. (2000).
Phylogenetic comparisons of a coastal bacterioplankton
community with its counterparts in open ocean and freshwa-
ter systems. FEMS Microbiology Ecology, 33, 219–232.
Zwart, G., Crump, B. C., Agterveld, M. P. K., Hagen, F., & Han,
S.-K. (2002). Typical freshwater bacteria: An analysis of
available 16S rRNA gene sequences from plankton of lakes
and rivers. Aquatic Microbial Ecology, 28, 141–155.Aerobic
BacteriaProtozoaOrganic
materials,
WastesSmall
FishHumansAlgaeBig FishMulticellular
Miscroscopic
AnimalsDissolved
Organic
MatterVirusesCO 2Natural Eutrophication
eg Rain washingMicrobial Loop
Organic Matter AddtionMicrobial LoopRegular Food WebKeyFig. 5.5 The microbial loop in the food web in a freshwater system