Biological Physics: Energy, Information, Life

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130 Chapter 4. Random walks, friction, and diffusion[[Student version, December 8, 2002]]



  • Stokes: Foramacroscopic (many nanometers) sphere of radiusamoving slowly through a
    fluid, the drag coefficient isζ=6πηa(Equation 4.14), whereηis the fluid viscosity.
    [In contrast, at high speed the drag force on a fixed object in a flow is of the form−Bv^2 for
    some constantBcharacterizing the object and the fluid (see Problem 1.7).]

  • Fick and diffusion: The flux of particles alongˆxis the net number of particles passing
    from negative to positivex,per area per time. The flux created by a concentration gradient
    isj = −Ddc/dx(Equation 4.18), wherec(x)isthe number density (concentration) of
    particles. (In three dimensionsj=−D∇c.) The rate of change ofc(x, t)isthenddct=Dd


(^2) c
dx^2
(Equation 4.19).



  • Membrane permeability: The flux of solute through a membrane isjs=−Ps∆c(Equa-
    tion 4.20), wherePsis the permeation constant and ∆cis the jump in concentration across
    the membrane.

  • Relaxation: The concentration difference of a permeable solute between the inside and
    outside of a spherical bag decreases in time, following the equation−d(∆dtc) =


(

APs
V

)

∆c
(Equation 4.21).


  • Nernst–Planck: When diffusion is accompanied by an electric field, we must modify Fick’s
    law to find the electrophoretic flux:j=D


(

−ddcx+kBqTEc

)

(Equation 4.23).


  • Nernst: If an electrical potential difference ∆Vis imposed across a region of fluid, then each
    dissolved ion species with chargeqcomes to equilibrium (no net flux) with a concentration
    change across the region fixed by ∆V =−kBqT∆(lnc)orV 2 −V 1 = −^58 q/emVlog 10 (c 2 /c 1 )
    (Equation 4.25).

  • Ohm: The flux of electric current created by an electric fieldEis proportional toE,leading
    to Ohm’s law. The resistance of a conductor of lengthdand cross-sectionAisR=d/(Aκ),
    whereκis the conductivity of the material. In our simple model, each ion species contributes
    Dq^2 c/kBTtoκ(Equation 4.26).

  • Diffusion from an initial sharp point: SupposeN molecules all begin at the same loca-
    tion in 3-dimensional space at time zero. Later we find the concentration to bec(r,t)=
    N
    (4πDt)^3 /^2 e
    −r^2 /(4Dt)(Equation 4.27).


Further reading


Semipopular:
Historical: (Pais, 1982,§5)
Finance: (Malkiel, 1996)


Intermediate:
General: (Berg, 1993; Tinoco Jr.et al.,2001)
Polymers: (Grosberg & Khokhlov, 1997)
Better derivations of the Einstein relation: (Benedek & Villars, 2000a),§2.5A–C, (Feynmanet al.,
1963a,§41)


Technical:
Einstein’s original discussion: (Einstein, 1956)

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