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defined as catalytic if any of the following take
place:
- Direct involvement in the catalytic mechanism,
for example, as a nucleophile. - Exertion of an effect, which aids catalysis, on
another residue or water molecule that is
directly involved in the catalytic mechanism.
3. Stabilization of a proposed transition-state
intermediate.
4. Exertion of an effect on a substrate or cofactor
that aids catalysis, for example, by polarizing a
bond that is to be broken.
Despite the impression that the enzyme’s struc-
ture is static and locked into a single conformation,
Figure 8.5.Schematic representation of the four levels of protein structure.