18 Proteomics in Fish Processing 417pH 10–12 immobilized pH gradients. Electro-
phoresis 15:1535–1540.
Brown PD, Kleiner DE, Unsworth EJ, Stetler-Stevenson
WG. 1993. Cellular activation of the 72 kDa type IV
procollagenase/TIMP-2 complex. Kidney Int 43:
163–170.
Butt A, Davison MD, Smith GJ, Young JA, Gaskell SJ,
Oliver SG, Beynon RJ. 2001. Chromatographic sep-
arations as a prelude to two-dimensional elec-
trophoresis in proteomics analysis. Proteomics 1:42–
53.
Campana SE, Thorrold SR. 2001. Otoliths, increments,
an elements: Keys to a comprehensive understanding
of fish populations? Can J Fish Aquat Sci 58:30–38.
Cash P. 2002. Proteomics: The protein revolution.
Biologist 49:58–62.
Cash P, Kroll JS. 2003. Protein characterization by
two-dimensional gel electrophoresis. Meth Mol Med
71:101–118.
Chelius D, Zhang T, Wang GH, Shen RF. 2003. Global
protein identification and quantification technology
using two-dimensional liquid chromatography nano-
spray mass spectrometry. Anal Chem 75:6658–6665.
Chevallet M, Santoni V, Poinas A, Rouquie D, Fuchs A,
Kieffer S, Rossignol M, Lunardi J, Garin J, Rabil-
loud T. 1998. New zwitterionic detergents improve the
analysis of membrane proteins by two-dimensional
electrophoresis. Electrophoresis 19:1901–1909.
Ciechanover A. 1994. The ubiquitin-proteasome prote-
olytic pathway. Cell 79:13–21.
Clauser KR, Baker PR and Burlingame AL. 1999. Role
of accurate measurement ( 10 ppm) in protein
identification strategies employing MS or MS/MS
and database searching. Anal Chem 71:2871–2882.
Cordwell SJ, Nouwens AS, Verrills NM, Basseal DJ,
Walsh BJ. 2000. Subproteomics based upon protein
cellular location and relative solubilities in conjunc-
tion with composite two-dimensional electrophore-
sis gels. Electrophoresis 21:1094–1103.
Corthals GL, Molloy MP, Herbert BR, Williams KL,
Gooley AA. 1997. Prefractionation of protein sam-
ples prior to two-dimensional electrophoresis. Elec-
trophoresis 18:317–323.
Courchesne PL, Patterson SD. 1999. Identification of
proteins by matrix-assisted laser desorption/ioniza-
tion mass spectrometry using peptide and fragment
ion masses. In: AJ Link, editor. 2-D Proteome Ana-
lysis Protocols, pp. 487–511. Totowa, New Jersey:
Humana Press.
Cowie WP. 1968. Identification of fish species by thin
slab polyacrylamide gel electrophoresis. J Sci Food
Agric 19:226–229.
Craiu A, Akopian T, Goldberg A, Rock KL. 1997. Two
distinct proteolytic processes in the generation of a
major histocompatibility complex class I-presented
peptide. Proc Natl Acad Sci USA 94:10850–10855.
De Francesco M, Parisi G, Médale F, Lupi P, Kaushik
SJ, Poli BM. 2004. Effect of long-term feeding with
a plant protein mixture based diet on growth and
body/fillet quality traits of large rainbow trout (On-
corhynchus mykiss).Aquaculture. (In press)
Dobly A, Martin SAM, Blaney S and Houlihan DF.- Efficiency of conversion of ingested proteins
 into growth; protein degradation assessed by 20S
 proteasome activity in rainbow trout, Oncorhynchus
 mykiss. Comp Biochem Physiol A 137:75–85.
 Dougherty DA, Wehling RL, Zeece MG, Partridge JE.
- Evaluation of selected baking quality factors
 of hard red winter wheat flours by two-dimensional
 electrophoresis. Cereal Chem 67:564–569.
 Dreger M. 2003. Subcellular proteomics. Mass Spec-
 trometry Reviews 22:27–56.
 Einen O, Mørkøre T, Rørå AMB and Thomassen MS.
- Feed ration prior to slaughter—A potential
 tool for managing product quality of Atlantic salmon
 (Salmo salar).Aquaculture 178:149–169.
 Erdjument-Bromage H, Lui M, Lacomis L, Tempst P.
- Characterizing proteins from 2-DE gels by
 internal sequence analysis of peptide fragments. In:
 AJ Link, editor. 2-D Proteome Analysis Protocols,
 pp. 467–472. Totowa, New Jersey: Humana Press.
 Foegeding EA, Lanier TC, Hultin HO. 1996. Char-
 acteristics of edible muscle tissues. In: OR Fennema,
 editor. Food Chemistry, pp. 879–942. New York:
 Marcel Dekker, Inc.
 Görg A, Obermaier C, Boguth G, Csordas A, Diaz J-J,
 Madjar J-J. 1997. Very alkaline immobilized pH gra-
 dients for two-dimensional electrophoresis of ribo-
 somal and nuclear proteins. Electrophoresis 18:328–
 - Görg A, Obermaier C, Boguth G, Weiss W. 1999. Re- 
 cent developments in two-dimensional gel electro-
 phoresis with immobilized pH gradients: Wide pH
 gradients up to pH 12, longer separation distances
 and simplified procedures. Electrophoresis 20:712–
 
 - Görg A, Postel W, Gunther S. 1988. The current state of 
 two-dimensional electrophoresis with immobilized
 pH gradients. Electrophoresis 9:531–546.
 Graves PR, Haystead TA. 2003. A functional pro-
 teomics approach to signal transduction. Recent
 Prog Horm Res 58:1–24.
 Henningsen R, Gale BL, Straub KM, DeNagel DC.
 
- Application of zwitterionic detergents to the
