treatment associated with that column, and 0 otherwise. Thus, for three treatments with two
subjects per treatment, the complete design matrix would be
S m A 1 A 2 A 3
Notice that subjects 1 and 2 (who received Treatment A 1 ) are scored 1 on mand A 1 , and 0
onA 2 and A 3 , since they did not receive those treatments. Similarly, subjects 3 and 4 are
scored 1 on mand A 2 , and 0 on A 1 and A 3.
We will now define the vector tof treatment effects as [mt 1 t 2 t 3 ]. Taking Xas the
design matrix, the analysis of variance model can be written in matrix terms as
y 5 Xt1e
which can be seen as being of the same form as the traditional regression equation. The
elements of tare the effects of each dummy treatment variable, just as the elements of bin
the regression equation are the effects of each independent variable. Expanding, we obtain
y 5 X 3t1e
which, following the rules of matrix multiplication, produces
For each subject we now have the model associated with her response. Thus, for the sec-
ond subject in Treatment 2, Y 22 5m1t 21 e 22 , and for the ith subject in Treatment j, we
have Yij5m1tj 1 eij, which is the usual analysis of variance model.
The point is that the design matrix allows us to view the analysis of variance in a multiple-
regression framework, in that it permits us to go from
Yij=m1tj 1 eij to y 5 Xb 1 e
Y 23 =m1t 31 e 23
Y 13 =m1t 31 e 13
Y 22 =m1t 21 e 22
Y 12 =m1t 21 e 12
Y 21 =m1t 11 e 21
Y 11 =m1t 11 e 11
y=F
1100
1100
1010
1010
1001
1001
V 3 D
m
t 1
t 2
t 3
T 1 F
e 11
e 21
e 12
e 22
e 13
e 23
V
a=
11100
21100
31010
41010
51001
61001
V
582 Chapter 16 Analyses of Variance and Covariance as General Linear Models