and Hypocrea. Fungal Genet Biol 42:813–828.
doi:10.1016/j.fgb.2005.06.007
Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs
MS, Glass NL, McCluskey K, Plamann M, Galagan
JE, Birren BW, Weiss RL, Townsend JP, Loros JJ,
Nelson MA, Lambreghts R, Colot HV, Park G,
Collopy P, Ringelberg C, Crew C, Litvinkova L,
DeCaprio D, Hood HM, Curilla S, Shi M, Crawford
M, Koerhsen M, Montgomery P, Larson L, Pearson
M, Kasuga T, Tian CG, Bastuerkmen M,
Altamirano L, Xu JH (2007) Enabling a community
to dissect an organism: overview of the Neuros-
pora functional genomics project. Adv Genet
57:49–96. doi:10.1016/s0065-2660(06)57002-6
Durkin CA, Mock T, Armbrust EV (2009) Chitin in
diatoms and its association with the cell wall.
Eukaryot Cell 8:1038–1050. doi:10.1128/ec.00079-09
Eastwood DC, Floudas D, Binder M, Majcherczyk A,
Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry
K, Bendiksby M, Blumentritt M, Coutinho PM,
Cullen D, de Vries RP, Gathman A, Goodell B,
Henrissat B, Ihrmark K, Kauserud H, Kohler A,
LaButti K, Lapidus A, Lavin JL, Lee YH, Lindquist
E, Lilly W, Lucas S, Morin E, Murat C, Oguiza JA,
Park J, Pisabarro AG, Riley R, Rosling A, Salamov A,
Schmidt O, Schmutz J, Skrede I, Stenlid J, Wiebenga
A, Xie XF, Kues U, Hibbett DS, Hoffmeister D,
Hogberg N, Martin F, Grigoriev IV, Watkinson SC
(2011) The plant cell wall-decomposing machinery
underlies the functional diversity of forest fungi.
Science 333:762–765. doi:10.1126/science.1205411
Ellison CE, Hall C, Kowbel D, Welch J, Brem RB, Glass
NL, Taylor JW (2011) Population genomics and
local adaptation in wild isolates of a model micro-
bial eukaryote. Proc Natl Acad Sci U S A 108:2831–
2836
Emoto Y (1977) The myxomycetes of Japan. Sangyo
Tosho, Tokyo
Fisher MC, Koenig GL, White TJ, San-Blas G, Negroni
R, Alvarez IG, Wanke B, Taylor JW (2001) Biogeo-
graphic range expansion into South America by
Coccidioides immitis mirrors New World patterns
of human migration. Proc Natl Acad Sci U S A
98:4558–4562
Fitzpatrick DA, Logue ME, Stajich JE, Butler G (2006) A
fungal phylogeny based on 42 complete genomes
derived from supertree and combined gene analy-
sis. BMC Evol Biol 6:99. doi:10.1186/1471-2148-6-99
Francois I, Aerts AM, Cammue BPA, Thevissen K (2005)
Currently used antimycotics: spectrum, mode of
action and resistance occurrence. Curr Drug Tar-
gets 6:895–907. doi:10.2174/138945005774912744
Fungal Genomes (2012) http://fungalgenomes.org/.
Cited 28 Mar 2012
Geissler S, Siegers K, Schiebel E (1998) A novel protein
complex promoting formation of functional a- and
g-tubulin. EMBO J 17:952–966
Gill EE, Lee RCH, Corradi N, Grisdale CJ, Limpright
VO, Keeling PJ, Fast NM (2010) Splicing and tran-
scription differ between spore and intracellular life
stages in the parasitic Microsporidia. Mol Biol
Evol 27:1579–1584. doi:10.1093/molbev/msq050
Giraud T, Refregier G, Le Gac M, de Vienne DM, Hood
ME (2008) Speciation in fungi. Fungal Genet Biol
45:791–802. doi:10.1016/j.fgb.2008.02.001
Gleason FH, Lilje O (2009) Structure and function of
fungal zoospores: ecological implications. Fungal
Ecol 2:53–59. doi:10.1016/j.funeco.2008.12.002
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B,
Feldmann H, Galibert F, Hoheisel JD, Jacq C,
Johnston M, Louis EJ, Mewes HW, Murakami Y,
Philippsen P, Tettelin H, Oliver SG (1996)
Life with 6000 genes. Science 274:546–567.
doi:10.1126/science.274.5287.546
GOLD (2012)http://www.genomesonline.org/cgi-bin/
GOLD/phylogenetic_distribution.cgi. Cited 28
Mar 2012
Greengenes (2012) http://greengenes.lbl.gov/. Cited
March 28 2012
Gull K, Trinci APJ (1974) Nuclear division in Basidio-
bolus ranarum. Trans Br Mycol Soc 3:457–460
Gunderson JH, Elwood H, Ingold A, Kindle K, Sogin ML
(1987) Phylogenetic relationships between chloro-
phytes, chrysophytes, and oomycetes. Proc Natl
Acad Sci U S A 84:5823–5827
Harris SD (2011) Hyphal morphogenesis: an evolution-
ary perspective. Fungal Biol 115:475–484.
doi:10.1016/j.funbio.2011.02.002
Hawksworth DL (2001) The magnitude of fungal diver-
sity: the 1.5 million species estimate revisited.
Mycol Res 105:1422–1432
Heckman DS, Geiser DM, Eidell BR, Stauffer RL,
Kardos NL, Hedges SB (2001) Molecular evidence
for the early colonization of land by fungi and
plants. Science 293:1129–1133
Heitman J, Kronstad JW, Taylor JW, Casselton LA (eds)
(2007) Sex in fungi: molecular determination
and evolutionary implications. ASM Press,
Washington, DC
Hibbett DS, Matheny PB (2009) The relative ages of
ectomycorrhizal mushrooms and their plant
hosts estimated using Bayesian relaxed molecular
clock analyses. BMC Biol 7:13. doi:10.1186/1741-
7007-7-13
Hibbett DS, Gilbert LB, Donoghue MJ (2000) Evolution-
ary instability of ectomycorrhizal symbioses in
basidiomycetes. Nature 407:506–508
Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P,
Nilsson RH (2011) Progress in molecular and mor-
phological taxon discovery in Fungi and options
for formal classification of environmental
sequences. Fungal Biol Rev 25:38–47
Horton TR, Bruns TD (2001) The molecular revolution
in ectomycorrhizal ecology: peeking into the
black-box. Mol Ecol 10:1855–1871
Hunger K, Beckering CL, Wiegeshoff F, Graumann PL,
Marahiel MA (2006) Cold-induced putative DEAD
box RNA helicases CshA and CshB are essential for14 J.W. Taylor and M.L. Berbee