Systems Biology (Methods in Molecular Biology)

(Tina Sui) #1
basic principles of default state and the intrinsic constraints gener-
ated by the epithelial cells. By identifying constraints to the default
state, multilevel biomechanical explanations become as legitimate
as the molecular ones on which other modelers rely. Expanding
research based on the premises of our theory of organisms will
enrich a comprehensive understanding of normal development
and of the one that goes awry.

Acknowledgments


This work was conducted as part of the research project “Addres-
sing biological organization in the post-genomic era” which is
supported by the International Blaise Pascal Chairs, Region Ile de
France (AMS: Pascal Chair 2013). Additional support was provided
by Award Number R01ES08314 (P.I. AMS) from the U. S.
National Institute of Environmental Health Sciences. The funders
had no role in the study design, data collection and analysis, deci-
sion to publish, or preparation of the manuscript. The authors are
grateful to Cheryl Schaeberle for her critical input. The authors
have no competing financial interests to declare.

References



  1. Bailly F, Longo G (2011) Mathematics and
    natural sciences: the physical singularity of
    life. Imperial College Press, London

  2. Longo G, Monte ́vil M (2014) Perspectives on
    organisms: biological time, symmetries and sin-
    gularities. Springer, Berlin

  3. Canguilhem G (1991) The normal and the
    pathological. Zone Books, New York

  4. Darwin C (1859) On the origin of species.
    Clowes and Sons, London

  5. Harris H (1995) The cells of the body: a his-
    tory of somatic cell genetics. Cold Spring Har-
    bor laboratory press. Plainview, NY

  6. Canguilhem G (2008) Knowledge of life.
    Fordham University Press, New York

  7. Miquel PA, Hwang SY (2016) From physical
    to biological individuation. Prog Biophys Mol
    Biol 122:51–57

  8. Sonnenschein C, Soto AM (1999) The society
    of cells: cancer and control of cell proliferation.
    Springer Verlag, New York

  9. Longo G, Monte ́vil M, Sonnenschein C, Soto
    AM (2015) In search of principles for a theory
    of organisms. J Biosci 40:955–968

  10. Soto AM, Sonnenschein C, Miquel P-A (2008)
    On physicalism and downward causation in


developmental and cancer biology. Acta
Biotheor 56:257–274


  1. Longo G, Monte ́vil M (2011) From physics to
    biology by extending criticality and symmetry
    breakings. Prog Biophys Mol Biol
    106:340–347

  2. Varela FG, Maturana HR, Uribe R (1974)
    Autopoiesis: the organization of living systems,
    its characterization and a model. Biosystems
    5:187–196

  3. Rosen R (1991) Life itself: a comprehensive
    inquiry into the nature, origin, and fabrication
    of life. Columbia University Press, New York

  4. Kauffman S (2002) Investigations. Oxford
    University Press, New York

  5. Monte ́vil M, Mossio M (2015) Biological
    organisation as closure of constraints. J Theor
    Biol 372:179–191

  6. Mossio M, Monte ́vil M, Longo G (2016) The-
    oretical principles for biology: organization.
    Prog Biophys Mol Biol 122:24–35

  7. Monte ́vil M, Speroni L, Sonnenschein C, Soto
    AM (2016) Modeling mammary organogene-
    sis from biological first principles: cells and
    their physical constraints. Prog Biophys Mol
    Biol 122:58–69

  8. Soto AM, Longo G, Miquel PA, Monte ́vil M,
    Mossio M, Perret N, Pocheville A,


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