- Check the hydrogen bond and hydrophobic interaction pro-
files of the selected top 10% compounds by the IDEA 8.8
software (IDEA 8.8, 2007 Breadth Technology, Taipei, Tai-
wan) (seeNote 3). - Carry out a manual binding orientation and conformation
analysis by comparing with AI-2 to make the final 42 hits
(Fig.4).
3.3 Quorum Sensing
Inhibition Assay
The anti-QS tests here described are performed according to previ-
ously reported procedures [32].1.V. harveyiMM32 (ATCC# BAA-1211) is streak-seeded on a
Luria Marine (LM) plate supplemented with 50μg/mL kana-
mycin and 10μg/mL chloramphenicol, and the plate is incu-
bated overnight at 30C.- A single colony is picked from the LM plate and inoculated into
2 mL of Autoinducer Bioassay (AB) medium [33]
Fig. 3A schematic illustration of the interactions of AI-2 with LuxPQ
358 Tianyu Jiang et al.