RNA Detection

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  1. Gently swirl the dish in a clockwise and anticlockwise direction
    so that the transfection mix covers the surface of the cells. Place
    the dish in the CO 2 incubator at 37C for 1 h.

  2. Wash the cells with 1 mL of complete DMEM and add 1 mL of
    precooled Triton X 0.01% solution containing 40 μMof
    cyclooctyne dye Cy3 DBCO. Incubate at 4C for 12 min
    and wash three times with 1 mL of 1PBS.

  3. Supplement the cells with 1 mL of freshly prepared DMEM
    containing 40μM of Cy3 DBCO. Place the dish immediately in
    the incubator at 37C for 30 min.


Fig. 4 Imaging cellular RNA transcription using AMUTP under copper-free
SPAAC reaction conditions. HeLa cells were transfected with 1 mM of AMUTP
for 1 h. The cells were fixed and stained by SPAAC reaction using Cy3 DBCO. This
figure has been reproduced by permission of Nucleic Acids Research: Oxford
Journals [24]


Imaging Newly Transcribed RNA in Cells 367
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